Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1768 ATGGACGAAGATTTGCTGAAGCGAAACACCGATTGCGTCTATTTCTTGGCCTCCCCCCTCACTTGCAAGAAGGGTGCTAACTGTGAGTATCGGCATCATGAGATTGCAAGGCTAAACCCAAGGGATTGCTGGTACTGGTTATCTGGGAATTGTCTTAATCCAACTTGTGCTTTCAGACACCCTCCATTGGAAGGGCATACTGGAGTGCCATCTGAACCTACACAGTCTTCTTTACCTGCAAACAAGACAACGGTTCCTTGTTATTTTTTCTTCAATGGATTTTGCAATAAAGGTGACAGATGCTCATTTTTACATGGACCTGATCATAACTCATTTTCCGGTAAGCCTGTGAAGAATGACTCTGGAATCAGTGATGCATTTCCCCTAGAAAATAAAACATCATCAGGAAGTAAAACAAGTGTAGCGGCGCCAACAGTAACATATCTTGATCCATCTGAAATTGCTCCAAAGGATGCGCATAATTGTAAATTTCAACCTATCAAAGATCTTCAACAAGAAGTACCAAAAACTGTTCAACAGCAAAATATATCCCCGGAGATATCTGCTTATGAGTATAAAGAAGCCACTGTGATTAGTCCGGCCTCCTTACTTCCAGAAGAAAGATTTCTTCATAGCATTTCCCATATATGCACTGAACAGAGTGCAGAGGAGCAAGTAAATAGTCACATAGAACCTGAGGAGCGATGGGAATCGTCCCCTGGATTTGATGTTCTTGTTGAAGATGAGATGGAGAACTTGGGCCATGAGAATGATTCTGAATATTTACCAGTGCTAGATAGGGAACGCAGGGAGTTAAATGGGCAATGCCTGCAGTACGAATTTAAAGACAGAGTTGAGTATGATCCTATATGCCCAGAAGCTGACATTCTGTATGAACAAGAGATGTATAACGGTTACAGATGCATGGATGATGATTATACACTTGTCGATGATAGAAAAGTTCCTGCTTATACCAGAGAGAGAATTATAGATTCTTTATTGTCCAGGAAGAGGTTTCGGATGCCAGCTGAAATGGCTGCTTGTGACAGAAACTTAGATCTACGAGACCATTTGAGGAGACGTAGGGAAGTGGAAATTAATGGTCGACCTGTTTCAGAATTTTTAAGGAGACATGAATCTTTTCTGATGATCCAGAACCAGGAAAGGCATAGAAGACACAGTGTTGATCAGAGGCTAAGTAGAAGATTGACATCAGAGGTGGGATTGAGCATGATTGACTCAAATGGAGAGGTTGAAACGCTTTCAGTGGCTAACAAGCATGGCATATTTAGGCATTCTCAGCAACATATATCAAGGAAGCAGCATTATAAAGAAAAACTCACTAAACGGCAGTTTATTTCATCTAAAATCTCTGGGAAACCAGTTTCAAAGCAGAGGAGATCGATTCACGAATCTAGGGCTTTTGCATTTAATGGACCGAAGACTCTTGCagaaattaaagaagagaagaaaaaggctGCAGGAAAAGGGTATTTGAAAAGCTCTGCCGCCGACTTCCAGGATCCCAAACCTCTTAGTGAAATCCTCAAGGACAAGAAGAGGTTGGATTCTGTGCGAGATGGCAATACCTGCAATGACTGA 1602 0.4114 MDEDLLKRNTDCVYFLASPLTCKKGANCEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPLEGHTGVPSEPTQSSLPANKTTVPCYFFFNGFCNKGDRCSFLHGPDHNSFSGKPVKNDSGISDAFPLENKTSSGSKTSVAAPTVTYLDPSEIAPKDAHNCKFQPIKDLQQEVPKTVQQQNISPEISAYEYKEATVISPASLLPEERFLHSISHICTEQSAEEQVNSHIEPEERWESSPGFDVLVEDEMENLGHENDSEYLPVLDRERRELNGQCLQYEFKDRVEYDPICPEADILYEQEMYNGYRCMDDDYTLVDDRKVPAYTRERIIDSLLSRKRFRMPAEMAACDRNLDLRDHLRRRREVEINGRPVSEFLRRHESFLMIQNQERHRRHSVDQRLSRRLTSEVGLSMIDSNGEVETLSVANKHGIFRHSQQHISRKQHYKEKLTKRQFISSKISGKPVSKQRRSIHESRAFAFNGPKTLAEIKEEKKKAAGKGYLKSSAADFQDPKPLSEILKDKKRLDSVRDGNTCND 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1768 533 SUPERFAMILY CCCH zinc finger 81 106 IPR036855 GO:0046872
Sto3g1768 533 Pfam Zinc-finger containing family 7 63 IPR041686 -
Sto3g1768 533 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 521 - -
Sto3g1768 533 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Sto3g1768 533 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Sto3g1768 533 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Sto3g1768 533 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Sto3g1768 533 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Sto3g1768 533 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 521 - -
Sto3g1768 533 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 107 IPR000571 GO:0046872
Sto3g1768 533 Gene3D - 3 64 - -
Sto3g1768 533 Gene3D - 72 168 - -
Sto3g1768 533 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto3g1768 zf-CCCH_3 1.4e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1768 - - aprc:113847503 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1768 3 13821549 13825064 Sto3g1768 3 13821549 13825064 ECH