Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1733 ATGAAACGGGAAGTGCAGCTAGAGCCGCCAGTTGCGCAAAACGTTGGTGATTCCGATCCTTTACTCGATAACCAGGAGGAGAATAGGgatgaggaagaggaggaggagtctCCGGGAAGTACAAGTGAGATTAAGGATGAGGATGTCGAGGCTGGCTCACTTCCTTGTTGTCGAATTTGCCTGGAAAGCGATTCCGACCCAGTAGATGATGAATTGATATCTCCATGCATGTGCAAGGGGACCCAACAGTTTGTCCATCGCTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGGTTTGCCTTCTCACACTGCACCACTTGCAAAGCCCAGTATCATCTTCGAGTTGAATTGTTTGAGGATAACTCTTGGCATAAAATAAAGTTCAGACTTTTTGTGGCAAGGGatgtttttcttgtatttttggCTGTACAAACTGTGATTGCTGCGATGGGTGGCTTTGCATACCTCATGGACAGAGATGGGGCTTTCAGGAACTCTTTTGATGATGGTTGGGATCGGATACTGTCAAAACATCCTATAccattttattattgtattgGAGTGCTGGCCTTCTTTGTGCTGCTTGGATTTTTCGGTCTCATACTGCATTGCTCTTCCCTCAACACCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCTGCATCAATGGAAGCATGCTTTGCCCTTGTGGTTGTTTTCGTCGTTATCTTTGCTATTCTGGGTATAGCTTATAGTTTCCTGGCAGCCACAATGGCAATTCAAAGAATTTGGCAGAGACACTACCACATCCTCACCAAGAGGGAGTTGACCAAGGAATACATAGTGGAGGATCTCCAAGGTTCATATTCTCCCCCAAAATTGGATCCAGAACATGAAGAGCGCTTGAAAATGCTCAAGCTTTTGTGA 942 0.4321 MKREVQLEPPVAQNVGDSDPLLDNQEENRDEEEEEESPGSTSEIKDEDVEAGSLPCCRICLESDSDPVDDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQYHLRVELFEDNSWHKIKFRLFVARDVFLVFLAVQTVIAAMGGFAYLMDRDGAFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNTNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYSFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLQGSYSPPKLDPEHEERLKMLKLL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1733 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 122 IPR013083 -
Sto3g1733 313 ProSiteProfiles Zinc finger RING-CH-type profile. 49 115 IPR011016 GO:0008270
Sto3g1733 313 MobiDBLite consensus disorder prediction 24 41 - -
Sto3g1733 313 MobiDBLite consensus disorder prediction 1 48 - -
Sto3g1733 313 SUPERFAMILY RING/U-box 54 113 - -
Sto3g1733 313 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 313 - -
Sto3g1733 313 Pfam RING-variant domain 57 108 IPR011016 GO:0008270
Sto3g1733 313 SMART ringv_2 56 109 IPR011016 GO:0008270
Sto3g1733 313 CDD RING_CH-C4HC3_MARCH 57 109 - -
Sto3g1733 313 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1733 Sto-Chr3 13449305 13452967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1733 1 313 C3H Transcription Factor Family AT1G11020 78.438 1.27e-172 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1733 - - zju:107432369 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1733 3 13449305 13452967 Sto3g1733 3 13449305 13452967 ECH