Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1730 ATGGCCCTCTCTGGCACTGTCATCCTCCTCGCTCTCCGACGAACCCCAACTTTCCCCCTCATATCTACTCCGTCGTCACTCAGATCTAAATTGAAGCAGAAGATAAGCGAAGCAGAGAGAAAACGTAAGAACCTCATTCTCAATCTTGTGTGTGTGTCACAGCCACCTCATTGTTCTTCGTTTCTCAGGTCAGAGGAGAAGAAACcgacctcacctcacctcaccgaTCTTCATTCTTCAGCTCAAGTATTTGCAAATCAAGCCATCCCGATTCGCAGAGAATATCTCAATCTCAAGGATCTAGAAATGGCGACGGTTGAAGTAGACCAGCGTCCCAATCCGCCATCGGAAGAAATCTGCTCGGCCAAGCCCACCAAGCAAGGCGAGGGTCTCCGCCAGTACTATCTTCAACACATCCACGAACTTCAGCTCCATGTCCGCCAGAAGTCCCATAACCTCAACCGTCTCGAGGCTCAACGGAACGAGCTCAATTCCAGGGTGAGGATGCTTCGAGAAGAGCTGCAGCTTCTTCAGGAGCCTGGATCTTATGTCGGTGAAGTAGTCAAAGTAATGGGAAAGAACAAAGTTTTAGTGAAGGTTCATCCAGAAGGAAAATATGTTGTTGATATTGATAAAAGTATTGATATTACAAAGATTACTCCATCAACTAGAGTTGCTCTACGCAATGACAGCTATGTTCTCCATTTAATTCTGCCGAGCAAAGTTGATCCGTTGGTCAACCTGATGAAAGTTGAAAAAGTTCCCGACTCTACTTATGACATGATTGGTGGCTTAGATCAGCAAATTAAAGAGATAAAAGAGGTTATTGAGTTACCAATTAAACATCCTGAACTGTTTGAAAGTCTTGGAATAGCTCAACCAAAGGGTGTGCTACTCTATGGACCACCTGGTACAGGAAAAACATTGTTGGCTAGGGCAGTGGCACATCATACAGATTGTACGTTCATTAGGGTTTCTGGTTCTGAATTGGTTCAGAAATATATTGGCGAAGGTTCAAGAATGGTTAGGGAGCTTTTTGTTATGGCAAGGGAGCATGCTCCATCAATTATCTTCATGGATGAAATTGATAGCATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTCCAGCGCACTATGCTGGAGCTTCTCAATCAGTTGGATGGATTTGAAGCTTCCAATAAGATCAAGGTTCTGATGGCCACGAACCGGATTGATATTTTGGATCAAGCCCTCCTTAGGCCTGGACGAATTGACAGGAAGATTGAATTtccaaaccctaatgaagagTCTCGGCaagatattttgaaaattcattcaAGAAGGATGAATCTAATGCGAGGTATTGATCTGAGGAAGATTGCAGAGAAAATGAATGGAGCATCTGGTGCTGAGCTTAAGCTAAAGAGATGCATTGACTTGCATGAGGAGATTTTATTAGGAGAACCCATGATGACATTAGCTAATCCAGTGATTCAGGCTGTGTGCACCGAAGCCGGAATGTTTGCCCTGAGGGAGAGGAGGGTCCATGTGACACAGGAAGATTTTGAGATGGCCGTGGCAAAGGTGATGAAAAAGGATACAGAGAAAAACATGTCATTGCGAAAGTTGTGGAAGTAA 1635 0.4281 MALSGTVILLALRRTPTFPLISTPSSLRSKLKQKISEAERKRKNLILNLVCVSQPPHCSSFLRSEEKKPTSPHLTDLHSSAQVFANQAIPIRREYLNLKDLEMATVEVDQRPNPPSEEICSAKPTKQGEGLRQYYLQHIHELQLHVRQKSHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRQDILKIHSRRMNLMRGIDLRKIAEKMNGASGAELKLKRCIDLHEEILLGEPMMTLANPVIQAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKDTEKNMSLRKLWK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1730 544 Gene3D - 250 431 IPR027417 -
Sto3g1730 544 Pfam Proteasomal ATPase OB C-terminal domain 184 239 IPR032501 -
Sto3g1730 544 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 140 472 IPR005937 GO:0005737|GO:0030163|GO:0036402
Sto3g1730 544 ProSitePatterns AAA-protein family signature. 401 419 IPR003960 GO:0005524|GO:0016887
Sto3g1730 544 Gene3D - 144 249 IPR012340 -
Sto3g1730 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 529 IPR027417 -
Sto3g1730 544 Coils Coil 28 48 - -
Sto3g1730 544 PANTHER BNAA02G04630D PROTEIN 474 541 IPR035261 GO:0036402
Sto3g1730 544 PANTHER BNAA02G04630D PROTEIN 123 472 IPR035261 GO:0036402
Sto3g1730 544 CDD AAA 263 430 - -
Sto3g1730 544 Pfam ATPase family associated with various cellular activities (AAA) 297 430 IPR003959 GO:0005524|GO:0016887
Sto3g1730 544 Coils Coil 139 173 - -
Sto3g1730 544 Gene3D - 436 539 - -
Sto3g1730 544 SMART AAA_5 293 433 IPR003593 -
Sto3g1730 544 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 123 472 - -
Sto3g1730 544 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 474 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1730 Sto-Chr3 13416465 13424078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1730 262 476 Calmodulin-binding Proteins AT3G56690 37.500 7.46e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1730 K03066 - ini:109166719 746.503