Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1725 ATGGGACTCAAATCTTTTGGAtcagatcatcatcatcactataGTTCATACAAGCTTCAAGATTTCTTGTCTCGTTTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCCTATGGAGGCTTCAAGGCAGCAACTTGAAGCACACAGAGGAAATGAAGGGTCAAGCTCATCAAGAGCACCTGTAATTCTAGAAGAATTCATACCCTTAAAGCATGATTCAACAACCTATGATAATCATGAGAATTCATCAAGCTTatgtgataataataataataaggcaaATTGGATGACATCTGCTCAGCTATGGAGCCAAACAAgtcatgaagaagaagaagaagaagaagaagaagaagaaagcaagACAAGAAAAGAAGGTGAAACTAATGGGTTCAATAATGTTAGCCCTAATAAGAGGAATATTAGTAGTAGTAATGGTGGAGGAGCCTTCCTTCCATTCTCAAAGGAATTAGGAATAAGAAGCTCTTCTAATTCCTCTTCACTGCCAAAACTATCCCTAATTAACGCCTCTTCTGATGAGAAAGAAATGGAGGACAAGAAGAATTGCACTCATGATGACAATccaaagaaggagaaggagagttCTAAAACAACtagcaccaccaccaccactactaCTACTTCCACTTCCGCCGCCACCCAGGCTCACCGGAAGACAAGGAGATGTTGGTCGCCGGACTTGCACCGCCGGTTTGTCAATGCTCTTCAGATGCTTGGTGGTTCTCAAGTGGCCACTCCCAAGCAAATTAGGGAGCTGATGAAGGTTGATGGATTGACCAATGATGAAGTTAAAAGTCATCTCCAGAAATATAGGCTTCACACAAGACGGCCCAGCCCAAGCCCACAAGGAGTTGGGGGACCCACACCCCAATTAGTAGTCCTCGGAGGCATTTGGGTCCCACCGGAATACGCCGCAGCAACCGTCGCCCATACAGGAGCCGCCAATGCACTATTTAACTTTAACCCACAATCATCCCACGCGCCACCACAGCACTACTGTACTACCACCCCTGTGCCCCAAGACTTTTACACTAACACACTACCGCAACCACCACATAGCCACGCTCTCCACCACGGCCTCCAGATGTACAAAACGACGTCGCACACCCAAAGATCGCCGGAATCTAAGGCTAGAGGAATGGGAGAAAGGTCGGAGAGTATAGAGGAGGAGGGGAAATCAGAAAGTAGTTACTAG 1215 0.414 MGLKSFGSDHHHHYSSYKLQDFLSRLEEERLKIDAFKPMEASRQQLEAHRGNEGSSSSRAPVILEEFIPLKHDSTTYDNHENSSSLCDNNNNKANWMTSAQLWSQTSHEEEEEEEEEEESKTRKEGETNGFNNVSPNKRNISSSNGGGAFLPFSKELGIRSSSNSSSLPKLSLINASSDEKEMEDKKNCTHDDNPKKEKESSKTTSTTTTTTTTSTSAATQAHRKTRRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQGVGGPTPQLVVLGGIWVPPEYAAATVAHTGAANALFNFNPQSSHAPPQHYCTTTPVPQDFYTNTLPQPPHSHALHHGLQMYKTTSHTQRSPESKARGMGERSESIEEEGKSESSY 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1725 404 MobiDBLite consensus disorder prediction 127 147 - -
Sto3g1725 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 222 282 IPR017930 -
Sto3g1725 404 SUPERFAMILY Homeodomain-like 223 283 IPR009057 -
Sto3g1725 404 MobiDBLite consensus disorder prediction 204 224 - -
Sto3g1725 404 MobiDBLite consensus disorder prediction 35 60 - -
Sto3g1725 404 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 403 - -
Sto3g1725 404 MobiDBLite consensus disorder prediction 177 226 - -
Sto3g1725 404 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 225 280 IPR006447 GO:0003677
Sto3g1725 404 Pfam Myb-like DNA-binding domain 227 278 IPR001005 -
Sto3g1725 404 MobiDBLite consensus disorder prediction 102 147 - -
Sto3g1725 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 403 IPR044787 GO:0003700|GO:0006355
Sto3g1725 404 MobiDBLite consensus disorder prediction 382 404 - -
Sto3g1725 404 Gene3D - 224 282 - -
Sto3g1725 404 MobiDBLite consensus disorder prediction 177 203 - -
Sto3g1725 404 MobiDBLite consensus disorder prediction 371 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1725 Sto-Chr3 13381562 13384227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1725 1 351 G2-like Transcription Factor Family AT2G03500 45.430 2.59e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto3g1725 Myb_DNA-binding 8.3e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1725 3 13381562 13384227 Sto12g1047 12 6585206 6587432 CCT
Sto3g1725 3 13381562 13384227 Sto3g1725 3 13381562 13384227 ECH