Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto3g1709 | ATGTTTCATGCTGTTGTGGCTCGAGGAAGATTCTCATTACCTGCACCATCTGTTCCACGTAATCGACATTGGGCACCGTGCCACGCCGTCATTGCAGTACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCATGATTTTGAAGCTGTCAACCTGAAGATTGTGTTCCTTCCCTTGCTAACATTTGAAATCATTATTCTAATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGATGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCAATCTCGATGGTCTTCTTTGTTGCTGCTACAGTCTTCACACTCTTAAAACTGTGTGGTGATGTAGGTGCTCTTGGCTGGTGGGACTTGTTTATTAACTTTGGTATTGCTGAGTGCTTTGCCTTTCTTGTATGCACAAAGTGGTCTAATCCAGTCATTCATAGAAATTCTCGCTCAAGAGAAGCCAGTTCATCTTCTAGTACAATTAGATATCTTGACTGGAATAGCGGTTTAGTAGTTTCTTCAGAGGAAAATCAGCGTCAGGAGAGAATGTGTGGCCTGCAAGACATAGGAGGTGCTGGTGTACTGTTTGCTGCATCTAAGTTGGTGGAGAAACTTATACTTCTGCTCCGTAGTGGTGCTGGCGAAGGAATATATTTTAGATTTTCTTCAAGAGCTCATGATTGTATGGGGTTCTTGCACCATGGTTCTAGGTTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGAGAAGAACAAGCACGGTTGTTCCAAGAGGGAGGATCTGGGTATAACACTTTCAGTGGTTATCCTCCTGAGATTGTTAAGACAATGCCTAAAAAGGATCTTGCCGAGGAGGTCTGGAGGCTCCAGGCAGCTCTTGGTGAGCAGACAGAAATTACAAAATACAGCCAGCAGGAATTTGAAAGACTTCAGAATGAGAAAGTGTTGTGCAGAATTTGTTTTGAGGGGGAGATTAGCATTGTCTTGCTACCATGCAGGCACCGTATTCTCTGCAGCGCTTGCTCCGTGAAGTGTAAGAAGTGCCCAGTTTGTCGTGTCGCCATCGAAGAGTGCTTACCGGTTTATGATGTTTAG | 1140 | 0.4342 | MFHAVVARGRFSLPAPSVPRNRHWAPCHAVIAVPLLIAFELLLCIYLESLYVHDFEAVNLKIVFLPLLTFEIIILIDNFRMCRALMPGDEENMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLCGDVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRNSRSREASSSSSTIRYLDWNSGLVVSSEENQRQERMCGLQDIGGAGVLFAASKLVEKLILLLRSGAGEGIYFRFSSRAHDCMGFLHHGSRLLGWWSIDEGSREEQARLFQEGGSGYNTFSGYPPEIVKTMPKKDLAEEVWRLQAALGEQTEITKYSQQEFERLQNEKVLCRICFEGEISIVLLPCRHRILCSACSVKCKKCPVCRVAIEECLPVYDV | 379 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto3g1709 | 379 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 307 | 377 | IPR013083 | - | |
| Sto3g1709 | 379 | PANTHER | TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN | 206 | 379 | - | - | |
| Sto3g1709 | 379 | PANTHER | TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN | 1 | 206 | - | - | |
| Sto3g1709 | 379 | Pfam | Zinc finger, C3HC4 type (RING finger) | 329 | 372 | - | - | |
| Sto3g1709 | 379 | Pfam | Transmembrane Fragile-X-F protein | 1 | 188 | IPR019396 | - | |
| Sto3g1709 | 379 | SUPERFAMILY | RING/U-box | 323 | 373 | - | - | |
| Sto3g1709 | 379 | SMART | ring_2 | 332 | 366 | IPR001841 | - | |
| Sto3g1709 | 379 | ProSiteProfiles | Zinc finger RING-type profile. | 332 | 367 | IPR001841 | - | |
| Sto3g1709 | 379 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 206 | - | - | |
| Sto3g1709 | 379 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 206 | 379 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto3g1709 | Sto-Chr3 | 13164133 | 13179350 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto3g1709 | 2 | 379 | C3H Transcription Factor Family | AT1G73950 | 69.309 | 0.0 | 548 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Sto3g1709 | 3 | 13164133 | 13179350 | Sto12g1031 | 12 | 6433522 | 6440324 | ECH | |
| Sto3g1709 | 3 | 13164133 | 13179350 | Sto3g1709 | 3 | 13164133 | 13179350 | ECH |