Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1679 ATGGACAAATCATTGCTTGCTAACACAGACAATAGGAGGATCATGGAGGTTCCCACAAGAAGATCATCAGATTCAGACATAattatgatgaagaagaagaagaagaagatgaagatgatgatgatgatgaatgagaGGAAGTACCTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGGTGGCTGAGATCAAAGATTCCTCACAGAAACTAAGGCTTTGGCTTGGAACTTTTGATACAGCACAAGAGGCTGCTCTGGCTTATGACtctgctgctaggcttctaaGAGGAAGAAATGCCAAGACAAACTTTCaaatcccttcttcttcttcttcttcttcttctttagggATCAATTATTGCAGCTTTTTGGGTAAGAATCCAAGGGCTTATCACATTCTGAAGCATGCATTAATCATGAagaaccatcatcatcatcatcatgcacTACAACTTTCTTCCACAAAATCCATAATGCCTGATCATTGGGAAAACAACATCATCAGTAATAATATTAACACGATTAGAGACCAAGAATTTGACACTAGACTTGTTGAAGAAAGTACTTGTGAAGATgcctcttcttattcttcttcttcaggaTGTTGTGGGTTTTCATTTGGGAGTTCTAAGGTTTACTCTTCTGTTGTTGTGGCTCCTTCTTTCAGTGACTCATTTTTTCAAACAGATGGTGTGCATGAAGAAACCCCACCACAAGCCTTGGCCATATCTCACACTACATGA 741 0.3144 MDKSLLANTDNRRIMEVPTRRSSDSDIIMMKKKKKKMKMMMMMNERKYLGVRQRPSGRWVAEIKDSSQKLRLWLGTFDTAQEAALAYDSAARLLRGRNAKTNFQIPSSSSSSSSLGINYCSFLGKNPRAYHILKHALIMKNHHHHHHALQLSSTKSIMPDHWENNIISNNINTIRDQEFDTRLVEESTCEDASSYSSSSGCCGFSFGSSKVYSSVVVAPSFSDSFFQTDGVHEETPPQALAISHTT 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1679 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 22 231 - -
Sto3g1679 246 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Sto3g1679 246 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Sto3g1679 246 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 231 - -
Sto3g1679 246 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Sto3g1679 246 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Sto3g1679 246 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Sto3g1679 246 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Sto3g1679 246 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Sto3g1679 246 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1679 Sto-Chr3 12841436 12843738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1679 34 117 AP2-EREBP Transcription Factor Family AT5G19790 59.524 2.58e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto3g1679 AP2 9.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1679 3 12841436 12843738 Sto3g1679 3 12841436 12843738 ECH