Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1658 ATGAAAGTCCGATCAGTGAAGCTGAGGGAAGCCCACAAGGCCGCCGGCAACGGCCGCGCTTCTTTCTGCTCCATCTTGTGGGACCAACAAGCTCAACACCTCGTCACCGCATGTGCTTCTGATGTCTCCATCTCAATTCATGACCCTCTCCTTCCTTCAACTCCCCCGAAGATTCTCAGCCACCATCGCGATGGGGTTACCGCTCTGGCTCTTAGCCCCAATTCTACTTGTCTTGCTTCTGGGTCCGTCGATCACTCCGTTAAGCTCTACAAGTTCCCGGGTGGAGAGTTTCAGACTAATATTACCAGGTTTACCCTTCCAATACGTTCCCTAGCATTTAATAAGTCAGGGAGTATGTTGGCAGCAGCTGGTGATGATGAGGGCATTAAACTTATTAATACAATTGATGGCTCTATTGCAAGGGTTCTCAAAGGACATAAGGGGACTGTCACTGGATTAGCATTTGACCCCAATGGTGAATACTTAGCATCTATGGATTCAACTGGAACTGTTATTTATTGGGAACTTCACTCAGGAAGAATAGTTCATAACCTTAAAGGCATTGCTCCTGACATTAGAGCAGATGTTTCTACTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTGGCTGTCCCTGGGTTGAAAAATGATGTTGTACTATATGATAGAGATACTGCTGAAAAGTTGTTTTCATTGAGAGGCGAACATGTACAACCTATATGTTTCTTGTCTTGGTCACCCAATGGAAAGTACATGGCTACTTCTGGCTTAGATAGGCAGGTTCTGATATGGGATGTTAATAGGAAGCAGGATATTGATAGACAAAATTTCAATGAAAGAATCTGCTGCATGGCTTGGAAGCCAATTGGTAATGCTCTAGCTGTTATTGATGTAATGGGGAAGTATGGAATCTGGGAGTCTGTTATTCCTTCATCTATGAAGTCCCCAACAGAGGATATTCCTATGCAATCTAAAAACAGTAATGGGCTTCTTTTGTTTGATGAGGAGGATCCTGAGCCTTGTGCAAGTGGAAGCTTAAGTGATCTTGGTGAAGATTGCAATGCTGAATTTGAACCTCCTAGCAGGAAAAGATTACGGAAACAATCTCTAAGCGAGGAATATTTTGATGAGGATGCTGGCGACGAAACAGCTTTATATCCAAAGGTTGAATCTCATAAAAAACCAAATCGCATGCACaaagaaaattttgatagcGTGAATGTGGGACATAAAAGCTCAATGATAGCATGTAAGCCAAAGATGCAGGAAGCATTTCAACCAGGATCTACTCCTGTGCAGCTTGGTAAAAGGCGTTTTTTATGTTACAATATGCTTGGAAGTATAACCACAGTTGAACATGATGGATACTCCCACATAGAGATTGATTTTCATGATACTGGAAGCAGTCCACGAATTCCATCAATGACTGATCATTTTGGATTTACTATGGCTGCCTTAAACGAGAATGGGAGTGTCTTTGCCAATCCTTGCAAGGGGGAAAAGAATATGAGCACTCTCATGTATCGTCCATTTAGTAGTTGGGCAAATAACAGTGAGTGGTCAATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCTCTAGGTGCTGCTTGGGTTGCCGCAGTAACTAGTTTTAACTATCTTCGTATTTTTACTGATAGTGGTTTGCAGAGACATATTATTTCAATGGATGGGCCAGTGGTGACTGCATCAGGATTCAAGGACAAACTTGCGGTTGTCACTCATGCTTCTGAGTGTGTTTCTTCAAATGATCAGATGCTAGAGTTCAGACTATTTAATATACCTAACACAACCCAGATCCTTAAAGGCCGCTTGCCATTAACTCCTGGTTCATCTCTAACTTGGTTTGGATTTAGTGAAGAAGGCCAATTGAGTACCTATGATTCTAAGGGTGTTCTGAGAGTGTTTACGAACCAATATGGTGGTAGCTGGCTCCCACTTTTCAGTGGGATTGAATACAAGCAAGTTATTCTTAGTCATGCTTTACATTTGTGCAATAAAACTTTTTTATACTGTCATCTGTTTTCTTTACCCTCATCATCGGCCACAGTGAgaaagaaaagcaTAATAGAGGGATTCATACTTTAtactattttgtcatcgagcgtaacaccGTGCTGGGGATGCGAGAACCAAAATGTTCTTAAAAAAAGTTTCTTATCACTTTATACCCGAAAACCTTCCTCAactttagggtttggtgtcgATAGGGATTCTTTGCATGAAGATGAGTATAATTGGATGGCCGGGTTGACGAGAGGGAACTTTAGGCTGTTAAAAAGTTGTAGATTTTTTGGCCAGATCTTCCGAATGCTACATCTTTTggttctgtTAAAACTAgctaaggggtgtctctgccaaattactcttttggttttCAACttggtccctaatctattcaatgtgggtatTCTCTTATTGGAGGCAGTCATGTTTgagttagctgagggaaatggagtacctaccactctaacCAACTACCTGATGTATTCGAATTTTAACCAATTATACGTGgttagaaaacaaaacaaaaacaagtcgAATTATAGATATAGCAACTTAGAGAGGCATTTTACAGAAGTGGGATGGAATTTTACTAATTCTAGTTTTGGAGTTATATGCATtatgttgttgttattgtgCCTTGTTTTAGGCATATTTCTTCAAAAAAGCCACGACGTGTCCAAGAACGAAAGACGCAAATATCCTCGACAAGCCAAGCCTCCTCTCGCCGCATGCCATGTGATGAGAGAAAGACACAAAATTGATTGA 2799 0.3809 MKVRSVKLREAHKAAGNGRASFCSILWDQQAQHLVTACASDVSISIHDPLLPSTPPKILSHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFQTNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGTVTGLAFDPNGEYLASMDSTGTVIYWELHSGRIVHNLKGIAPDIRADVSTMNVLCWSPDGETLAVPGLKNDVVLYDRDTAEKLFSLRGEHVQPICFLSWSPNGKYMATSGLDRQVLIWDVNRKQDIDRQNFNERICCMAWKPIGNALAVIDVMGKYGIWESVIPSSMKSPTEDIPMQSKNSNGLLLFDEEDPEPCASGSLSDLGEDCNAEFEPPSRKRLRKQSLSEEYFDEDAGDETALYPKVESHKKPNRMHKENFDSVNVGHKSSMIACKPKMQEAFQPGSTPVQLGKRRFLCYNMLGSITTVEHDGYSHIEIDFHDTGSSPRIPSMTDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGAAWVAAVTSFNYLRIFTDSGLQRHIISMDGPVVTASGFKDKLAVVTHASECVSSNDQMLEFRLFNIPNTTQILKGRLPLTPGSSLTWFGFSEEGQLSTYDSKGVLRVFTNQYGGSWLPLFSGIEYKQVILSHALHLCNKTFLYCHLFSLPSSSATVRKKSIIEGFILYTILSSSVTPCWGCENQNVLKKSFLSLYTRKPSSTLGFGVDRDSLHEDEYNWMAGLTRGNFRLLKSCRFFGQIFRMLHLLVLLKLAKGCLCQITLLVFNLVPNLFNVGILLLEAVMFELAEGNGVPTTLTNYLMYSNFNQLYVVRKQNKNKSNYRYSNLERHFTEVGWNFTNSSFGVICIMLLLLCLVLGIFLQKSHDVSKNERRKYPRQAKPPLAACHVMRERHKID 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1658 932 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Sto3g1658 932 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Sto3g1658 932 SMART WD40_4 227 267 IPR001680 GO:0005515
Sto3g1658 932 SMART WD40_4 178 224 IPR001680 GO:0005515
Sto3g1658 932 SMART WD40_4 2 48 IPR001680 GO:0005515
Sto3g1658 932 SMART WD40_4 94 133 IPR001680 GO:0005515
Sto3g1658 932 SMART WD40_4 136 175 IPR001680 GO:0005515
Sto3g1658 932 SMART WD40_4 52 91 IPR001680 GO:0005515
Sto3g1658 932 Pfam Minichromosome loss protein, Mcl1, middle region 426 658 IPR022100 -
Sto3g1658 932 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Sto3g1658 932 MobiDBLite consensus disorder prediction 345 370 - -
Sto3g1658 932 Gene3D - 2 191 IPR015943 GO:0005515
Sto3g1658 932 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Sto3g1658 932 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Sto3g1658 932 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Sto3g1658 932 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Sto3g1658 932 CDD WD40 27 297 - -
Sto3g1658 932 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 661 - -
Sto3g1658 932 Pfam WD domain, G-beta repeat 231 267 IPR001680 GO:0005515
Sto3g1658 932 Pfam WD domain, G-beta repeat 57 90 IPR001680 GO:0005515
Sto3g1658 932 Pfam WD domain, G-beta repeat 141 167 IPR001680 GO:0005515
Sto3g1658 932 Gene3D - 192 309 IPR015943 GO:0005515
Sto3g1658 932 SUPERFAMILY WD40 repeat-like 22 308 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1658 62 270 U-box Gene Family AT2G33340 21.698 5.19e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1658 K11274 - qsu:112010612 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1658 3 12624331 12639043 Sto3g1658 3 12624331 12639043 ECH