Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1655 ATGGTGGTAGGAAGTACTCACAAGGTGTGGACTGTTTACCCAAGAGGCAAGGTCTCACAAAAGGGTTACAAGATAGGGAGAGATCATTGTTGGCGTTGTTTGCCGCCGTTGCTGATCGTTGGCATTGTCGTCGAGAGAAGAAGCAGAGCACACGACGAAGAAGAAAGAGATTCgttggatgatgatgatgGAGCCTCCGGAAGAAGAAAAACCACGCACGACTTTCTTTCACTGTACAGTACTCACTCTAGTGCCCAACAAGATCCTCCAAGGCCATCTTCTCAAGGAAGTTACCTCAAAACCCAGGATTTCTTGCAACCACTGGAAcgcaaagaaaagaaattaagcaGTAATGCTAATGCAAAGGAAGAAGCAGGAGAGGAGAGATCATGGGGGATTCAAAAGGCATCACCACCTACCATGGAGCACGTGCTACCTGGAGGGATTGGGACTTACAGTATCAGCCacatttctaattattttaataaccaAATGAATATTCCAAAGGCGGAGGCACCTGTTTTTGCGGTGGCTCAGGCAAGTAGTACGGACATAATAAATGATGACAACTCCAACTGCAGTTCTTATACCGGTGGAAGCGGTTTCAGTCTGTGGGAAGAGTCTGCAGTTAACAAGGGAAAGACAAGGAAGGAGAATACTGTGGTTGAGAAACCCATTTCAGGAGATTCTGCCGCTAAGCTAGGGCAGTGGGCGTTAGCGGAGCGAACGTCACAGTCGTATTCCAACACTCGTCACAACAACTTCAACTCTCTCCCTTCCTCTCAGTTAGTAGTTCTGACTCTTTTGCTTTGTGTTTTTATGGGTGTGCATGTTTTGCAAGGTGAGTTATTCACGGGTTTGTGCTGGGATTTGCGGGAATTGAACAGGACAAGTGGGCAGAAGAAACAGAGTGTGATTGAAATGATAAAATCCGCAAAGGGCGATTGTATCCAGGATGAGGAGCCTGACAATGAAGAAGCATTCATTCTCAAGAAAGAATGCTGCAATGCCCAAATAGGGGAAATGAGAGTGAAAGTTGATGGGAAGAGCACTGATCAAAAGCCTAACACGCCACGATCAAAACATTCTGCCACAGAGCAGCGTAGAAGAAGCAAAATCAATGACAGGCAATGTGCTAGATTTCAGATGCTAAGAGATCTTATTCCACATAGTGACCAGAAGAGGGATAAGGCATCTTTTTTGTTAGAGGTCATTgagtatattcattttttacaaGAGAAGGTGCACAAGTATGAAGGATCATACCAAGAATGGAATCATGAGGCAGAAAAATTGATGCCTTGGAGAAAAAATTACAGGCCTGCTGAAAGTTATATCGATCAATCTTGTGGGTCAAATGGTGGGGCTGGTCTACCTCCAACATCGATTTTTGATTCCAAGCTTGATGAGAAAAATATTACCATCATCCCAGCATTTCCTGGGTGCACTCAGAATGTAGAATCTGGCATCAACCCTGCAACAACAAATAAAGCCATGCCAAATCCTGTTGCTTCACAGCCAAATCTCATTGCACCTGCCCAAAATGGTAGTCCAGATGGAGTAGTGTCTCAGCTCTCAGATAGATTGCCATTGGTTGCAGAAAACAACATATATCAACCTTCTGCGCAGTGTCAGACTTACTCTTTTCCTACAGAGGTGACTCCCACCAATGATAAGCCGAAGGAGAAAGAGGTCACTATTGAAGGTGGTGCCATTAGCATATCAAGTGTGTACTCAAGAGGAATGCCGTCCTTTGTGATTTTGGAAGCCTGCTGGCTAACCGGCTTCTCCCTAAATGCTTCCATGTTGTTAAATACACTAACACAAGCACTTCAAAGTTCTGGAGTGGATTTATCACGAGCTAGCATCTCAGTGCAAATTGAGCTAGGTAAGCAAGCAAACATCAGACATTCAGTGCCAACGTCAGGTGCTCAGAATTGTGGCCTATTAGCTAATTCATCAACGATTTTGCTCAAGGATAATGAGCTCGTTTCTGGGAATCAAGGGATGGCACGCCCTAGAGTTGCCAACGCTGAAGACTCTAACCACGCAGCAAAGAAGCCAAAAACACGAAGAAGCTAA 2082 0.4347 MVVGSTHKVWTVYPRGKVSQKGYKIGRDHCWRCLPPLLIVGIVVERRSRAHDEEERDSLDDDDGASGRRKTTHDFLSLYSTHSSAQQDPPRPSSQGSYLKTQDFLQPLERKEKKLSSNANAKEEAGEERSWGIQKASPPTMEHVLPGGIGTYSISHISNYFNNQMNIPKAEAPVFAVAQASSTDIINDDNSNCSSYTGGSGFSLWEESAVNKGKTRKENTVVEKPISGDSAAKLGQWALAERTSQSYSNTRHNNFNSLPSSQLVVLTLLLCVFMGVHVLQGELFTGLCWDLRELNRTSGQKKQSVIEMIKSAKGDCIQDEEPDNEEAFILKKECCNAQIGEMRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRQCARFQMLRDLIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSYQEWNHEAEKLMPWRKNYRPAESYIDQSCGSNGGAGLPPTSIFDSKLDEKNITIIPAFPGCTQNVESGINPATTNKAMPNPVASQPNLIAPAQNGSPDGVVSQLSDRLPLVAENNIYQPSAQCQTYSFPTEVTPTNDKPKEKEVTIEGGAISISSVYSRGMPSFVILEACWLTGFSLNASMLLNTLTQALQSSGVDLSRASISVQIELGKQANIRHSVPTSGAQNCGLLANSSTILLKDNELVSGNQGMARPRVANAEDSNHAAKKPKTRRS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1655 693 MobiDBLite consensus disorder prediction 345 373 - -
Sto3g1655 693 SMART finulus 363 417 IPR011598 GO:0046983
Sto3g1655 693 MobiDBLite consensus disorder prediction 670 693 - -
Sto3g1655 693 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 68 261 IPR044295 GO:0003700|GO:0006351|GO:0046983
Sto3g1655 693 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 296 582 IPR044295 GO:0003700|GO:0006351|GO:0046983
Sto3g1655 693 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 602 690 IPR044295 GO:0003700|GO:0006351|GO:0046983
Sto3g1655 693 MobiDBLite consensus disorder prediction 111 139 - -
Sto3g1655 693 Pfam Helix-loop-helix DNA-binding domain 359 412 IPR011598 GO:0046983
Sto3g1655 693 Gene3D - 355 434 IPR036638 GO:0046983
Sto3g1655 693 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 357 411 IPR011598 GO:0046983
Sto3g1655 693 MobiDBLite consensus disorder prediction 111 130 - -
Sto3g1655 693 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 433 IPR036638 GO:0046983
Sto3g1655 693 Coils Coil 108 128 - -
Sto3g1655 693 CDD bHLH_AtBIM_like 356 436 - -
Sto3g1655 693 MobiDBLite consensus disorder prediction 49 70 - -
Sto3g1655 693 PANTHER TRANSCRIPTION FACTOR BIM1 602 690 - -
Sto3g1655 693 PANTHER TRANSCRIPTION FACTOR BIM1 296 582 - -
Sto3g1655 693 PANTHER TRANSCRIPTION FACTOR BIM1 68 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1655 Sto-Chr3 12581340 12593743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1655 69 633 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 42.042 1.79e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g1655 HLH 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1655 - - gmx:100808016 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1655 3 12581340 12593743 Sto3g1655 3 12581340 12593743 ECH