Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1649 ATGCCTCCCTCTAGTTTTTGCCTTCTTATAGGGCTGTTTTCGTCTTTTCGCGTTTGGGGAGAAATACTTAGAAATGGAAGATACAGTACGTACAGTGAGGAATATTTGTCAGACTTTGGAAGCAAacctcattcttcttcttcttcttcacactcTCTTCTATCACTGACACACCTCGCCGGAAagtccattcttcttcttcattttcccGGAAATTTACAGTTCCGAGGCCGGAATTTCGAAACCGTTTTCCCTCGATTCTTGTGGATTCGTAATTCTGGAGGGGTTTTTCTTCCCGGAGTTGGAGAGAGGGAGTGCCCGAGGTGCGACTCCGTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCGCAGCCTCGCTACTTCTGCAAGAGCTGCCGGAGATACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGTGGTTGCCGCAAATCCAAGCGCTCCAAGCCCAAACACTCTCCCTCCGAACCCTCCGCCGCCGCCGCGACGACgacgacaacaacaacaacaacgacGTCGTTTCAACCGGATCAAGATCAGCTCAAGACGACATCGAACTCTCATTCCAGTAGCGAAAGCTCGGCGGCACCGTCGTCCAACAACTCGATGGATAATCTCAGCAATCTTCCGCCTCACGAGTCCAATAATAACTCCTCGTCGTTCTTCGTCCATCCCGATTCGAACCCTAGCTTCGGAGAAACTGCGATTTTCTCCGAAATAGGGAACCTAACGAGCTTGATCGCATCCTCCACCTCCAGCCACGAGACAATGGCGTTTGGATACGGAAGCATCCCCGATGCGACGATGACGACGACGTCGTTTCAGTTCACTCATCCCCCTCATGGTCAGGACTTGATGCCGCcgccgacgacgacgacgattgATCAGACGGTGGCGGCGGAATTGTCGGCGATGCAGAGTAAATTCGGGCCGTTGGATTGGCAATCGAGTACGGCGGATCAAGGTTTGTTTGATCTAACTAACACCGTAGATCAGGCTTACTGGACTCATCACACCCAGTGGAATAATCAAGACAATCCTACTACTCTCTTTCCTCTACCTTGA 1098 0.4718 MPPSSFCLLIGLFSSFRVWGEILRNGRYSTYSEEYLSDFGSKPHSSSSSSHSLLSLTHLAGKSILLLHFPGNLQFRGRNFETVFPRFLWIRNSGGVFLPGVGERECPRCDSVNTKFCYYNNYNLSQPRYFCKSCRRYWTKGGVLRNVPVGGGCRKSKRSKPKHSPSEPSAAAATTTTTTTTTTSFQPDQDQLKTTSNSHSSSESSAAPSSNNSMDNLSNLPPHESNNNSSSFFVHPDSNPSFGETAIFSEIGNLTSLIASSTSSHETMAFGYGSIPDATMTTTSFQFTHPPHGQDLMPPPTTTTIDQTVAAELSAMQSKFGPLDWQSSTADQGLFDLTNTVDQAYWTHHTQWNNQDNPTTLFPLP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1649 365 MobiDBLite consensus disorder prediction 149 237 - -
Sto3g1649 365 MobiDBLite consensus disorder prediction 168 237 - -
Sto3g1649 365 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 105 350 IPR045174 GO:0003700|GO:0006355
Sto3g1649 365 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
Sto3g1649 365 Pfam Dof domain, zinc finger 104 158 IPR003851 GO:0003677|GO:0006355
Sto3g1649 365 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
Sto3g1649 365 PANTHER DOF ZINC FINGER PROTEIN 4 105 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1649 Sto-Chr3 12519050 12520310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1649 105 365 C2C2-Dof Transcription Factor Family AT5G60850 39.927 1.44e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto3g1649 zf-Dof 1.9e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1649 3 12519050 12520310 Sto3g1649 3 12519050 12520310 ECH