Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1642 ATGGGACGAGGGAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGACAGGTGACGTTCAGTAAGAGAAGGTCCGGTTTGTTGAAGAAAGCGAGAGAGATCTCTGTGCTTTGCGATGCCGAGGTTGCTCTCATCCTCTTCTCCACCAAAGGAAAACTCTTCCACTACTCCAGCGACACCTgTATGGAAAGAATTTTGGAACGTTATGAGAGGTATTCATACGCAGAGAGGCAGCTAGCTGCAAATGATCAGCAACCCAAAATTTGTGAGGAAAACTGGGCTCTAGAACATGCAAAGTTGAAGGCAAGAATAGAGGTGCTACAGAGAAATCAAAGGCATTTCATGGGAGAAGATTTGGATGGCTTAACTCTCAAAGAACTTCAGCATTTGGAACATCAGCTTGATTCTGCTCTCAAGCACATCAGATCACGAAagGACAAGGCACTACAGGAACAAAACAACATACTGGCTAAGAAGatAAAGGAGAGAGAGAAGGCTATGGTGAATGAGGGTGGAGCACAATTGGAGCAACAAAATCATAATATGGATGATTCCTCTCTCCTCTTACCACAAACTTCTTTGCAGTCCTTCAACATTATTGGGTCAGTCTCTCTCTTCTAA 624 0.4343 MGRGRVELKRIENKINRQVTFSKRRSGLLKKAREISVLCDAEVALILFSTKGKLFHYSSDTCMERILERYERYSYAERQLAANDQQPKICEENWALEHAKLKARIEVLQRNQRHFMGEDLDGLTLKELQHLEHQLDSALKHIRSRKDKALQEQNNILAKKIKEREKAMVNEGGAQLEQQNHNMDDSSLLLPQTSLQSFNIIGSVSLF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1642 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto3g1642 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto3g1642 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto3g1642 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto3g1642 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto3g1642 207 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Sto3g1642 207 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Sto3g1642 207 ProSiteProfiles K-box domain profile. 91 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto3g1642 207 Pfam K-box region 91 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto3g1642 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto3g1642 207 Coils Coil 91 111 - -
Sto3g1642 207 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Sto3g1642 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 193 - -
Sto3g1642 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto3g1642 207 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1642 Sto-Chr3 12426169 12434143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1642 1 207 MADS-box Gene Family AT1G26310 57.466 1.74e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto3g1642 K-box 6.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1642 K09264 - pop:7484716 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1642 3 12426169 12434143 Sto12g0991 12 6169083 6173556 ECH
Sto13g1880 13 26271750 26275448 Sto3g1642 3 12426169 12434143 ECH
Sto3g1642 3 12426169 12434143 Sto3g1642 3 12426169 12434143 ECH