Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1641 ATGGAGTCTTGGAGTTATGTTTCTGAAGATAAGGGTTTTGTGTCCAATAATGCAATTTCATCTCCTAATTCGCTTGCGAGAAGCAAGAGTTCTTTTCTGGGTTTTGTGCCTAATGATATGTTTGCCCCAGCTCAACCCCACATAGAGAATCAAGTTTGTGAGGAATTGGGTTTTCCAGAAATGTTGGGGAAACAGTTGTCTGATGATCCGATTGGCTGTGGTCCCGGAAGTAGAATCATTAGTCAAGTTATGAGTCCCCCAAATGCATTTTCTGGAGGTGAAGACTCAAATTCAAAGTTTTCAAACTCTGTGGTTGAATCTAACAGCCGGGATTCCCTCATTGATTTGAAGCTGGGACGATTTGGTGATCAGAAAGATGCCAATGATTCGACATTTTCCAAAGGGAATTCCATTCTGTGTTCTTCAGAGTCATCTACGACCCACAAGAGAGTGAGAACTTCAGGGGTGCAGTCACAGATTGCTTACTGCCAAGTCCATGGCTGCAACAAGGATCTAAGTGCCTCTAAAGACTACCACAAGCGGCACAGAGTTTGTGAGGTTCACTCCAAGACTGCTAAAGTTATAGTGAATGGCATCGAGCAGAGGTTTTGTCAGCAATGTAGTAGGTTCCATTTGCTGGGTGAATTTGATGATGATAAGCGCAGCTGCCGCAAACGCCTCGCAGGCCATAATGAGCGTCGTAGAAAGCCACAAGTGGGTATTCACTCTGGAAAGGCCAGGCGGTTGCTTCCATCATATAatgATGGCAGATTCCAAGGTACCATGCTAACAACAGCATCTTTTATCTGCCAAGAGATACTCCCTAGTGGTGTTCTGCATTCTGAGAAATATGGTGCAGATAATTGGTGGAGACCTATCAAGGTTGAAGACGGGACTGACTTTAGGCATACCTCTGCTATTCCTATCACTAATGGGCATTCTCAATCGAGGTCTCTGTTTCCTTCATATGCGGGAAAGCAATTTCCCTTTGTAAATGAAAGTGGTACTACATCCACTACAGGAAGCATTTTCTGTGGGAACAACAGTCAATATCCACCTGCTCTCGGGGATCCTCATTCCGGGCCGCGAGCCTTATTCCAAGACACCTTCTTAGGAAGTGAGGACTTCAATGCTTTCAATACTGCGTCAACTGTTCAGGGATTATCAGGACTTACAGACTCAGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAGGCCATTCGTCAGGAATTCCCATGGCTCGTCCCATGGTTACTTCAAGCAGCCACAGCCATTACAGCATGAGTCAGGTCCCTGAAAAGATCATGGGAATAAGCTCACAGGCTTCAACAAGTGGGGTGTCAAGTAGCTTTCCATCAGAAATAAATCCCCCTAATAGAGGTCATCCTGGTCCTGTATTGGTATCACACAACCATGATATTGTCAACTTAGAAATGCCAGATGGTATTTTCCAAGGATCAGATTTTGTGAATATGAAAAATCGTCTTTCTTGTGAAGATGGCCCCACTATTGACTTGTTTCAACTGTCATCACAGCTCCACCGAGTTGAGCATCAAAGGCAATCCTTGCAGATGAAGCAAGAAAATGATTTGTTTTGCTCCCACCGGATTACGGAGCAAGAAGTGAAGCATGAGGCAGACACCTGA 1659 0.4473 MESWSYVSEDKGFVSNNAISSPNSLARSKSSFLGFVPNDMFAPAQPHIENQVCEELGFPEMLGKQLSDDPIGCGPGSRIISQVMSPPNAFSGGEDSNSKFSNSVVESNSRDSLIDLKLGRFGDQKDANDSTFSKGNSILCSSESSTTHKRVRTSGVQSQIAYCQVHGCNKDLSASKDYHKRHRVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLGEFDDDKRSCRKRLAGHNERRRKPQVGIHSGKARRLLPSYNDGRFQGTMLTTASFICQEILPSGVLHSEKYGADNWWRPIKVEDGTDFRHTSAIPITNGHSQSRSLFPSYAGKQFPFVNESGTTSTTGSIFCGNNSQYPPALGDPHSGPRALFQDTFLGSEDFNAFNTASTVQGLSGLTDSGCALSLLSSQSQNSSGHSSGIPMARPMVTSSSHSHYSMSQVPEKIMGISSQASTSGVSSSFPSEINPPNRGHPGPVLVSHNHDIVNLEMPDGIFQGSDFVNMKNRLSCEDGPTIDLFQLSSQLHRVEHQRQSLQMKQENDLFCSHRITEQEVKHEADT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1641 552 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 542 IPR044817 GO:0003677
Sto3g1641 552 MobiDBLite consensus disorder prediction 407 430 - -
Sto3g1641 552 ProSiteProfiles Zinc finger SBP-type profile. 160 237 IPR004333 GO:0003677
Sto3g1641 552 MobiDBLite consensus disorder prediction 85 104 - -
Sto3g1641 552 Pfam SBP domain 163 236 IPR004333 GO:0003677
Sto3g1641 552 MobiDBLite consensus disorder prediction 443 469 - -
Sto3g1641 552 PANTHER 1 PROTEIN, PUTATIVE-RELATED 38 542 - -
Sto3g1641 552 MobiDBLite consensus disorder prediction 443 460 - -
Sto3g1641 552 Gene3D - 153 224 IPR036893 GO:0003677|GO:0005634
Sto3g1641 552 SUPERFAMILY SBT domain 161 241 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1641 Sto-Chr3 12380787 12386710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1641 114 280 SBP-box Gene Family AT1G69170 53.293 1.58e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto3g1641 SBP 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1641 - - gmx:100777766 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1641 3 12380787 12386710 Sto12g0989 12 6146434 6148774 ECH
Sto3g1641 3 12380787 12386710 Sto3g1641 3 12380787 12386710 ECH