Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1619 ATGGCCGCCGCTGCTGCTCGTCCTCTCGTTACTGTCCAATCCCTCGAAGGCGATATGGCCACCGACGCAGCCCCAACCGTCGCACTCCCCGATGTCATGAGGGCATCGATCCGACCCGATATTGTCAACTTCGTTCACTCCAACATTTCCAGGAACAGCCGCCAACCCTACGCCGTCAGCAGGCGTGCCGGCCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGTGCCGTGTCTCGTATCCCCCGTGTTCCCGGCGGTGGTACTCACCGCGCCGGGCAGGCTGCGTTCGGCAACATGTGCCGTGGTGGCCGCATGTTCGCTCCTACAAGGATTTGGCGCCGCTGGCACCGTAGGGTCAATGTGACTCAGAAGAGGCACGCCGTCGTTTCGGCTATTGCCGCGTCGGCGGTTACGTCTCTGGTCATGGCTCGCGGTCACCGGATCGAGTCCGTTCCGGAAATGCCTCTGGTGGTTAGTGATTCTGCGGAGGGCGTTGAGAAGACCAAGGATGCGATCAAGGTTTTGAAGCAGATCGGCGCGTTTCCGGATGCTGAGAAGGCGAAGGATAGTCACGCGATCCGACCTGGTAAGGGTAAGATGAGGAACCGCCGCTATATTTCTCGCAAGGGTCCACTGATTGTGTATGGGACTGAAGGCGCTAAAGCTGTTAAGGCCTTCAGGAACATTCCTGGTGTTGAGATTGCCAATGTGGAGAGACTGAATCTGCTTAAGCTTGCACCTGGTGGTCATCTTGGGAGGTTCGTTATTTGGACCAAATCTGCGTTCGAGAAGCTGGATTCTATATATGGATCATTCGAGAAGCcatcggagaagaagaagggttacCTGCTTCCCAGGGCCAAGATGGTGAATTCTGATTTGGCTAGGATTATCAACTCCGATGAGATTCAGTCTGTTGTGAGGCCGATCAGGAAGGACGTCAAGAGGGCACCATTGAAGAAGAACCCACTCAAGAACCTGAATGTTATGTTGAAGCTGAATCCATATGCTAAGACGGCCAAGAGGATGGCTCTGCTGGCTGAGGAACAACGCGTAAAAGCTAAGAAAGAGAAGCtggataagaagaggaagaccgTTCCCAAGGAGGAGGCTTCTGCTATCAAGGCTGCAGGCAAGGCATGGTACCATACCATGGTTTCTGACAGTGATTATGCTGAATTTGATAACTTCTCGAAGTGGTTGGGTGTTTCGCAGTAA 1221 0.525 MAAAAARPLVTVQSLEGDMATDAAPTVALPDVMRASIRPDIVNFVHSNISRNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRRVNVTQKRHAVVSAIAASAVTSLVMARGHRIESVPEMPLVVSDSAEGVEKTKDAIKVLKQIGAFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYLLPRAKMVNSDLARIINSDEIQSVVRPIRKDVKRAPLKKNPLKNLNVMLKLNPYAKTAKRMALLAEEQRVKAKKEKLDKKRKTVPKEEASAIKAAGKAWYHTMVSDSDYAEFDNFSKWLGVSQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1619 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Sto3g1619 406 PANTHER BNAC03G35890D PROTEIN 3 406 - -
Sto3g1619 406 SUPERFAMILY Ribosomal protein L4 11 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
Sto3g1619 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Sto3g1619 406 MobiDBLite consensus disorder prediction 56 74 - -
Sto3g1619 406 PANTHER 60S RIBOSOMAL PROTEIN L4 3 406 IPR045240 -
Sto3g1619 406 Coils Coil 346 366 - -
Sto3g1619 406 Pfam 60S ribosomal protein L4 C-terminal domain 281 353 IPR025755 -
Sto3g1619 406 MobiDBLite consensus disorder prediction 56 92 - -
Sto3g1619 406 Pfam Ribosomal protein L4/L1 family 28 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1619 Sto-Chr3 12144312 12146634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1619 1 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 85.468 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1619 K02930 - gmx:100779764 736.487