Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1617 ATGGCGATGGAGCAAGTTCCCAATGGAGTGCGCTCTATTTCAACTCAAGCAGTCAGAAATCGGATGAAGAGTGTGAAGAATATCCAGAAAATTACAAAGGCAATGAAGATGGTTGCAGCCTCGAAACTACGTGCTATTCAAACTAAAGCTGAAAATTCACGTGGCCTATGGCAGCCATTTACTGCCCTTCTGGGTGACATTCCCAGTGTTGATGTGAAGAAGAATGTTATTGTTACCATTTCATCAGACAAAGGTCTGTGTGGTGGAATCAATTCTACATCAGTCAAGATAAGCAGGGCTGTGCACAAACTGAATTCTGGCCCTGATAAAGAGACAAAGTATGTCATTTTGGGAGAGAAGGCTAAGGCTCAATTGATACGTGACTCTAAGAAAGATATTGAGCTCATCTTAACTGAGCTGCAGAAAAATCCCCTGAATTATACTCAGGTCTCTGTCTTGGCAGATGATATCTTAAAGAATGTGGAGTTTGATGCCTTAAGGGTTGTTTACAACAAGTTTCAATCAGTTGTCTCTTTTCTGCCAACTATGTCTACTGTATTATCTCCTGAGATTGTGGAGAGAGAGACTGAATCTGGGGGAAAGCTGGGTGATTTGGACTCTTATGAGATAGAAGGTGGTGAGACAAAATCGGAAATACTTCAGAACCTGGCTGAGTTCCAGTTTTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGTTCTAGCAGAAATGCTGGGGATATGCTTGACCGTCTCACCCTCACCTATAAtagAACTCGTCAAGCATCCATCACCACTGAATTGATTGAGATTATCTCAGGAGCATCAGCACTAGAAGGTTGA 882 0.4274 MAMEQVPNGVRSISTQAVRNRMKSVKNIQKITKAMKMVAASKLRAIQTKAENSRGLWQPFTALLGDIPSVDVKKNVIVTISSDKGLCGGINSTSVKISRAVHKLNSGPDKETKYVILGEKAKAQLIRDSKKDIELILTELQKNPLNYTQVSVLADDILKNVEFDALRVVYNKFQSVVSFLPTMSTVLSPEIVERETESGGKLGDLDSYEIEGGETKSEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1617 293 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 14 291 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto3g1617 293 Hamap ATP synthase gamma chain [atpG]. 12 291 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto3g1617 293 CDD F1-ATPase_gamma 14 288 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto3g1617 293 Gene3D ATP synthase, gamma subunit, helix hairpin domain 17 288 - -
Sto3g1617 293 PANTHER BNAA05G10580D PROTEIN 4 292 - -
Sto3g1617 293 PANTHER ATP SYNTHASE GAMMA CHAIN 4 292 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto3g1617 293 Pfam ATP synthase 15 291 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto3g1617 293 PRINTS ATP synthase gamma subunit signature 72 91 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto3g1617 293 PRINTS ATP synthase gamma subunit signature 164 181 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto3g1617 293 PRINTS ATP synthase gamma subunit signature 238 257 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto3g1617 293 PRINTS ATP synthase gamma subunit signature 269 290 IPR000131 GO:0015986|GO:0045261|GO:0046933
Sto3g1617 293 Gene3D - 38 250 - -
Sto3g1617 293 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 14 291 IPR035968 GO:0015986|GO:0045261|GO:0046933
Sto3g1617 293 ProSitePatterns ATP synthase gamma subunit signature. 277 290 IPR023632 -
Sto3g1617 293 PIRSF ATP_synthase_gamma 1 291 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1617 5 291 Primary Pumps ATPases AT1G15700 30.178 1.38e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1617 K02136 - rcu:8286653 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1617 3 12111472 12116387 Sto3g1617 3 12111472 12116387 ECH