Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1599 ATGGAAGAAGAAGATCACAAACCCAAACATGTGTGTAGGTTGTGCAGCAAGAGGTTCTTGTGTGGTAGATCCTTGGGGGGTCACATGAGGTCCCACATCGCCTACACTTCACAGCCCAAACTTTCAGCGACGAACCTCTCAACCGCCACCATTAATGGCTATGGTCTGAGGCAAAAGCGCAAGAAGACTTGGAGAATCGCCAATCCTAGTGACGACACTCATTGTGGTAATAAAGGGTTTGTCTCTTGTAAGGCTCTGTTTGGCCACATGAAATCCCATTCCCACAAACAAGGTGCTTCCAATTTTAATAACAACAACATCTTCCAAGAACAGGATTCATCATGGACaacatcatcttcctcctcttcttctgaACAAGAAGAGGTGGCTATGAGTTTGATGATGCTGAGTAGAGACATGAGCCCATGGGGATTCCATCAAATGGGTTCTGACAAAACAGCAAAAAGATCAAAACTTTGGGGGTCTCATCACATTCCAAGAAGTGGGTTTATGATGAACAAGGCAAAGAAGCTAGAttctgatgaagaagaagatgataatgataatgagaaAGAGTCCAAGAAGAGAAAAGGGCATCACGAGTGTCCAATTTGCCTCAAGGTTTTTGCATCAGGGCAAGCATTGGGTGGGCATAAGAGGACACATTTGGGTGTGTCTCATAGAAGAAAGGATCAAGGTGGAGTTTTGATTGAAGAAGCAGTTAGGGAGTTCAATATTGATCTTAATCTTCCTGCTGTTATAGAGGAAGATAGCAACAATAATGGTAGTCATTGTGAGTCTTATaggtcatcatcatcatcaccctgGTGGGTACTAGGAGGCACCCACAAGAAGGAGATATTGGTACTCTTCAATTTGTTTACACAAATGTCAAATAGAACCAGAAGTCGCAGTGACACTTCCTTTAATGTGGAGGAACTCTTGAAGATTGGAGCAAGATGTATAGAACtcagaaaagaaaagaacagGCTAAAAATTTCACACTCACGAAGTTTTGAACAACTTCAGATGCTAGAACTACATGAGAAGTCATTATCAGAATTTCATACAGAAGATAAGAGACACATCGAGAGATTGGAAAAAGAGCTGCTAAACTATTCTCAAGAAATAGATTATCTTCAAGATCTACTAAATGCAAAAGACAAAGAGGTAATCAACCTAAAAGAGTGTGTTTACAGCCTCAAGTTGAATTTGGAGGAGATGGAAAGCTTACAAGAAGAGGTTTTCAGGTTAAGGGAGGAGCTGCAGATATCCAATTCTGAGAAGTTTATTTTGATGCAGCAACTAGAGACTAAAGAAATGGAATTAGATAAGTTAGCTTTTTCTACAGAGAAACTGGAAGAATCAATTTCATCCATAACGTTAGAGTCTCAGTGTGAAGTAGAGAGTATGAAGCTTGATATGATGGCCTTGGAGCAGAGTTTTTTTGAGGCAAAGAAAATCCAGGATGAAACTGTAGAAGAAAATACTAGAATGAACAAACTGATTGAAGAGCTCCAGGTTGCATTTCAGGAGGCTCAAAAAGTTATTAGTTCTCTGGATGAGGAAAACAGGGAACTTAAAGAGAAGCTTAGTACTGCCAACATGGGAACACAATGTTTCCTTCAGAAGGTTGAAGACTGGCTGGAAAACAATGACAGATCACAACTCAACTGTCAGTCTTCCTTGAGTGAACAAAAGAGTAGTTCTATAATATCCCAGGACACAAGTGCTTACGGTGAAGAATTGGATCTACTCCTTGCAAGATTGGCAAGAGTCTTGGAGAATAAGGCAGATTCAAAAGGAGAGCTGGAGAAGATGTATCGTCAGATGGAAGAATATGAATTTCTCGTGGAGAAACTTAAGGAAGAATTGAGAGAAGAGAAGTTAAAGGCCAAAGAAGAAGCAGAGGAATTGGCTCAGGAAATGGCAGAGCTGAGATATCAAATTACTGGTTTGCTAGAAGAAGAATGTAAGCGTCGTGCCTGCATTGAACAGGCATCTTTGCAAAGAATTGCTGAGTTAGAGGCGCagAGATTGGCATTGGTCAAAGTCCTTCAGTTCTTCAGTAGTGAACTGTCTAAAAgCGAAGAGTTTGTCTCTGAAGCAGCGAAGGAACCCAAGTGGTTGTTGGGTGGTGCATTTGCCATTATGGGGTGCAACGATTGA 2169 0.3914 MEEEDHKPKHVCRLCSKRFLCGRSLGGHMRSHIAYTSQPKLSATNLSTATINGYGLRQKRKKTWRIANPSDDTHCGNKGFVSCKALFGHMKSHSHKQGASNFNNNNIFQEQDSSWTTSSSSSSSEQEEVAMSLMMLSRDMSPWGFHQMGSDKTAKRSKLWGSHHIPRSGFMMNKAKKLDSDEEEDDNDNEKESKKRKGHHECPICLKVFASGQALGGHKRTHLGVSHRRKDQGGVLIEEAVREFNIDLNLPAVIEEDSNNNGSHCESYRSSSSSPWWVLGGTHKKEILVLFNLFTQMSNRTRSRSDTSFNVEELLKIGARCIELRKEKNRLKISHSRSFEQLQMLELHEKSLSEFHTEDKRHIERLEKELLNYSQEIDYLQDLLNAKDKEVINLKECVYSLKLNLEEMESLQEEVFRLREELQISNSEKFILMQQLETKEMELDKLAFSTEKLEESISSITLESQCEVESMKLDMMALEQSFFEAKKIQDETVEENTRMNKLIEELQVAFQEAQKVISSLDEENRELKEKLSTANMGTQCFLQKVEDWLENNDRSQLNCQSSLSEQKSSSIISQDTSAYGEELDLLLARLARVLENKADSKGELEKMYRQMEEYEFLVEKLKEELREEKLKAKEEAEELAQEMAELRYQITGLLEEECKRRACIEQASLQRIAELEAQRLALVKVLQFFSSELSKSEEFVSEAAKEPKWLLGGAFAIMGCND 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1599 722 Coils Coil 604 656 - -
Sto3g1599 722 SMART c2h2final6 10 32 IPR013087 -
Sto3g1599 722 SMART c2h2final6 73 93 IPR013087 -
Sto3g1599 722 SMART c2h2final6 200 222 IPR013087 -
Sto3g1599 722 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Sto3g1599 722 ProSitePatterns Zinc finger C2H2 type domain signature. 12 32 IPR013087 -
Sto3g1599 722 MobiDBLite consensus disorder prediction 162 197 - -
Sto3g1599 722 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 297 678 - -
Sto3g1599 722 Coils Coil 485 537 - -
Sto3g1599 722 Coils Coil 401 428 - -
Sto3g1599 722 Coils Coil 356 383 - -
Sto3g1599 722 SUPERFAMILY beta-beta-alpha zinc fingers 10 222 IPR036236 -
Sto3g1599 722 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 227 IPR013087 -
Sto3g1599 722 Pfam C2H2-type zinc finger 77 93 - -
Sto3g1599 722 Pfam C2H2-type zinc finger 10 32 - -
Sto3g1599 722 Pfam C2H2-type zinc finger 199 223 - -
Sto3g1599 722 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Sto3g1599 722 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 277 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1599 Sto-Chr3 11916567 11923848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1599 9 257 C2H2 Transcription Factor Family AT1G02030 31.618 1.30e-23 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto3g1599 zf-C2H2_6 1.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1599 - - qlo:115965670 379.407