Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1593 ATGTCAAGTGAAGATAAGGATGTGAGGAAGAAGGAAAATACAATAATACCTTTGAAGATTGCAATCCAAAAAGAGATGACATATAGGACCAAATTCTTATCTTCCCTTCATAGGCGTCCACATGACCGTGATGATCATCACTCCATTCAAAACTTTCTTCCTTTGAagGTTTCACCTTCAGTTCAAACTCCTCAGCAAGtagcaccaccaccaccacttctTCCTCCAGCTTCAACTCCATCATCTCTTTCGGGAACGAAACGAAAAGAACCAGACAATTTATACTGTGAAATCTGCAGAGTATCATGCTCCAGTGTTCTCAATCTGAAGCAGCACTTGATGGGACACAAGCACAGATCAAAGCTGCAAGAGCTGGAACTCAATCAAAATAACAGTAACGGAAGGCACTGGTGTGAAGTGTGCAAAGTGGCATGCATGAATGAAGACTTGCTCAATCTGCACTTTAAGGGTCGGAAGCACAGGGTAGAAGTGCACAAGTTTGAAACTTGCAAGGAAGAAGGAGGTGAAGTAACCCTTAGTCACCGAAAACGGTGTGAGCTATGTCAAATATGGTGCATTGATATGTTTTCTTTCAAGCAGCATCTTCAAGGTAGAAAGCACATATTCCAATTGCATTCTGTGCAGAGAGAAAACAAGAATGGAATGGGAGGGAAGAATGCAAAGGCTTAA 690 0.4014 MSSEDKDVRKKENTIIPLKIAIQKEMTYRTKFLSSLHRRPHDRDDHHSIQNFLPLKVSPSVQTPQQVAPPPPLLPPASTPSSLSGTKRKEPDNLYCEICRVSCSSVLNLKQHLMGHKHRSKLQELELNQNNSNGRHWCEVCKVACMNEDLLNLHFKGRKHRVEVHKFETCKEEGGEVTLSHRKRCELCQIWCIDMFSFKQHLQGRKHIFQLHSVQRENKNGMGGKNAKA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1593 229 PANTHER ZINC FINGER RNA-BINDING PROTEIN 67 209 - -
Sto3g1593 229 SMART ZnF_U1_5 133 167 IPR003604 GO:0003676|GO:0008270
Sto3g1593 229 SMART ZnF_U1_5 91 125 IPR003604 GO:0003676|GO:0008270
Sto3g1593 229 SMART ZnF_U1_5 180 214 IPR003604 GO:0003676|GO:0008270
Sto3g1593 229 SMART c2h2final6 183 207 IPR013087 -
Sto3g1593 229 SMART c2h2final6 136 160 IPR013087 -
Sto3g1593 229 SMART c2h2final6 94 116 IPR013087 -
Sto3g1593 229 SUPERFAMILY beta-beta-alpha zinc fingers 180 213 IPR036236 -
Sto3g1593 229 PANTHER ZINC FINGER RNA-BINDING PROTEIN-LIKE 67 209 - -
Sto3g1593 229 SUPERFAMILY beta-beta-alpha zinc fingers 130 164 IPR036236 -
Sto3g1593 229 Pfam Zinc-finger of C2H2 type 184 207 - -
Sto3g1593 229 Pfam Zinc-finger of C2H2 type 137 160 - -
Sto3g1593 229 Pfam Zinc-finger of C2H2 type 94 118 - -
Sto3g1593 229 MobiDBLite consensus disorder prediction 61 89 - -
Sto3g1593 229 Gene3D Classic Zinc Finger 177 221 - -
Sto3g1593 229 Gene3D Classic Zinc Finger 82 128 - -
Sto3g1593 229 Gene3D Classic Zinc Finger 129 176 - -
Sto3g1593 229 MobiDBLite consensus disorder prediction 64 78 - -
Sto3g1593 229 SUPERFAMILY beta-beta-alpha zinc fingers 70 126 IPR036236 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto3g1593 zf-met 9.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1593 - - aip:107619886 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1593 3 11885365 11886866 Sto3g1593 3 11885365 11886866 ECH