Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1589 ATGTCGGACGAGGAGCACCACTTTGAGTCCAAGGCCGATGCCGGAGCCTCCAAGACCTACCCTCAGCAAGCCGGAACCATCCGCAAGAACGGCTACATCGTCATCAAGGGCCGCCCCTGCAAGGTTGTCGAAGTTTCCACTTCAAAGACCGGTAAGCACGGCCATGCTAAGTGCCACTTTGTTGGAATTGATATTTTCACCGCCAAGAAGCTTGAAGATATTGTGCCTTCTTCCCACAATTGTGATgtTCCTCATGTGAATCGTACTGACTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTGCTTACTGATAATGGAAACACCAAGGATGACCTGAGGCTTCCTACTGATGACAATCTGCTTTCCCAGATAAAGGATGGATTTGCTGATGGAAAGGACCTTGTTGTTTCTGTTATGTCTGCAATGGGAGAGGAGCAGATTTGTGCCCTAAAGGATATTGGGCCAAACTTTGTCATGGCTGGGCTGGTAACCTTAGTCTTGTCTATGGTCTTTATGGATTTGTTGGGACAAAGTGTTATCACTTTTATGGGGCTCAATACTAGGTTGTCTCCCAAAGGACCATCCAAGAAAGAGACAAGCGCATCAAAGGCTGCCATTCTCTTTCTCCAATCACGTCTTGCAAAATTCCCCATAATCCTCAAAGGTTTCACAATTGGCAGAAAAACATCATCTCCTATTCTACGCGCAACTAAACCAAGGcatctaccaccaccaccaccacctgcCTTTGTGAATTCCCACCCTCCTTCGAGCAGGGTCTCCAACAGCAAGAGGACAAGCTCAGGAAGAACTTGCTTGCTAAGATAG 837 0.4516 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLSQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPNFVMAGLVTLVLSMVFMDLLGQSVITFMGLNTRLSPKGPSKKETSASKAAILFLQSRLAKFPIILKGFTIGRKTSSPILRATKPRHLPPPPPPAFVNSHPPSSRVSNSKRTSSGRTCLLR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1589 278 MobiDBLite consensus disorder prediction 257 278 - -
Sto3g1589 278 CDD S1_eIF5A 86 156 - -
Sto3g1589 278 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Sto3g1589 278 MobiDBLite consensus disorder prediction 241 256 - -
Sto3g1589 278 PANTHER BNAA07G09420D PROTEIN 1 157 - -
Sto3g1589 278 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Sto3g1589 278 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Sto3g1589 278 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Sto3g1589 278 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Sto3g1589 278 Gene3D - 1 85 IPR014722 -
Sto3g1589 278 MobiDBLite consensus disorder prediction 1 21 - -
Sto3g1589 278 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Sto3g1589 278 MobiDBLite consensus disorder prediction 237 278 - -
Sto3g1589 278 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Sto3g1589 278 Gene3D - 86 159 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1589 Sto-Chr3 11844819 11847472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1589 1 158 Eukaryotic Initiation Factors Gene Family AT1G13950 91.139 4.38e-104 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1589 K03263 K02180 sind:110011879 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1589 3 11844819 11847472 Sto3g1589 3 11844819 11847472 ECH