Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1587 ATGGGTTGTGTGAGTTCGAAGCAGTCGGTGTCGGTGACGCCTGCGGTTGACCACTCCGAGTCGGAtagtaagaagaagaagaagagtactGAGTCTGTGGGAGTGAGTCGGAGCGAGGTGGGTGAGTCAGGGAGAGCGAGTTCAAATGGGGGTTGTGAGTCTTTGAGCTTCAGATTGGGGAATCTGCACAAGTATGTGGAGGGAGAGCAAGTGGCGGCGGGTTGGCCTGCTTGGCTTAGTGCCGTCGCTGGTGAAGCCATTCAGGGTTGGGTCCCCCTCCGAGCTGATGCGTTTGAGAAACTGGAGAAGATTGGACAAGGTACGTATAGCAGTGTGTTCCGAGCACGAGATCTTGAGACAGGGAAGATAGTGGCTCTGAAGAAGGTGCGGTTTGACAATTTTGAGCCAGAAAGTGTTAGGTTTATGGCTCGAGAAATAATGATTCTCAGAAGGCTTGATCATCCGAACATCATAAAATTGGAGGGCTTGATTACTTCCAAATTGTCATGTAGCATATATCTTGTATTTGAGTATATGGAACATGACATTACAGGGCTCTTATCTTCCCCTGATGTCAAATTTAGTGAATCACAGATTAAGTGCTACTTGAAGCAGTTGCTATCTGCACTTGATCATTGTCATTCACGCGGTGTAATGCATCGTGACATCAAAGGGTCTAATCTTTTGGTGAATAATGAAGGCATACTAAAGGTAGCTGATTTTGGATTGGCAAACTTCTCAAATTCAGGGCACAGGCAGCCCCTCACAAGTCGTGTTGTCACCTTATGGTATCGTCCTCCTGAACTTCTGCTGGGTTCAACTGACTATGGTCCATCTGTGGATCTCTGGAGCATTGGCTGTGTATTTGCGGAACTACTCGTTGGGAAGCCTATCCTTCAGGGCAGAACAGAGGTCGAACAGTTGCACAAAATCTTCAAGCTTTGTGGCTCCCCACCCGATGAATACTGGAAAAAGACCAAACTTCCTCATGCAACTTTGTTTAAGCCACAGCAACCATATAATAGTTGTCTCCGAGAAACCTTTAAAGATTTGCCTCCAACTAGTGTGAATTTGCTACAAACTCTTCTTTCCGTTGAACCATACAAACGTGGAACTGCCTCCTCTGCTCTCTCATCAGAGTATTTTAAAACCAAGCCATATGCATGTGATCCATCAACCCTGCCGACATACCCACCTAGCAAGGAGATTGATGCAAAACACCGGGAGGAGTCAAGGAGGAAAAAGATTGGGGGAAGATCTCGTGGACCTGAAACAAGAAAACCATCAAGAAAGCCACTGGGATTCAGTAAATTAGTCCCAACAGAGGATTTGGCGAGTCAAACCCAGAATTCCCAGAGGATCAATGGGAGATCGGTCCTTGTTCTCAAAGAAGAGAACACCAACACAGGTGAGGAGGAACCAAAGCCATCTAATGGTAAACTAGAAGATGCTTCCCATACAAAGAATAATGCATCTCAAGGAGATATTCCCTTCTCTGGACCTTTGCAAGTTTCCACATCAAGTGGCTTTGCATGGGCAAAAAGGCGTAAAGATGATGTGTCAATAAGATCACACTGTCGATCTATTTCAAGAGGGAGTCATGACCAACATGAAATTCCTAAGCTTTCAATGCAGAATCCGTGGAGTAAGTTTGATCGGCCAGATTCATTTGATGCTTCCGATGAATACCACTCGCAAGAACTATCTATGGCACTTTATCATAGAGAAGATTCGATGTCGAAGAGAAGTAACCTGAGTTATCAGGATCAAGGAGAAAAGGTGGAGTTTTCGGGACCCCTATTATCTCAGATGCACACAGTTGATGAGCTCTTAGAAAGACACGAGCGCCACATCCGCCGTACAGTCCGAAGATCTTGGTTTCAAAGAGGAAAGAAGCAAGGGAAATAA 1908 0.4513 MGCVSSKQSVSVTPAVDHSESDSKKKKKSTESVGVSRSEVGESGRASSNGGCESLSFRLGNLHKYVEGEQVAAGWPAWLSAVAGEAIQGWVPLRADAFEKLEKIGQGTYSSVFRARDLETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSKLSCSIYLVFEYMEHDITGLLSSPDVKFSESQIKCYLKQLLSALDHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGHRQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSIGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQQPYNSCLRETFKDLPPTSVNLLQTLLSVEPYKRGTASSALSSEYFKTKPYACDPSTLPTYPPSKEIDAKHREESRRKKIGGRSRGPETRKPSRKPLGFSKLVPTEDLASQTQNSQRINGRSVLVLKEENTNTGEEEPKPSNGKLEDASHTKNNASQGDIPFSGPLQVSTSSGFAWAKRRKDDVSIRSHCRSISRGSHDQHEIPKLSMQNPWSKFDRPDSFDASDEYHSQELSMALYHREDSMSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKQGK 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1587 635 MobiDBLite consensus disorder prediction 18 33 - -
Sto3g1587 635 MobiDBLite consensus disorder prediction 388 502 - -
Sto3g1587 635 MobiDBLite consensus disorder prediction 579 599 - -
Sto3g1587 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Sto3g1587 635 CDD STKc_CDK9_like 98 382 - -
Sto3g1587 635 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Sto3g1587 635 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 30 534 - -
Sto3g1587 635 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 533 628 - -
Sto3g1587 635 MobiDBLite consensus disorder prediction 1 17 - -
Sto3g1587 635 MobiDBLite consensus disorder prediction 466 482 - -
Sto3g1587 635 MobiDBLite consensus disorder prediction 1 50 - -
Sto3g1587 635 MobiDBLite consensus disorder prediction 34 50 - -
Sto3g1587 635 ProSiteProfiles Protein kinase domain profile. 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g1587 635 SUPERFAMILY Protein kinase-like (PK-like) 92 389 IPR011009 -
Sto3g1587 635 Gene3D Phosphorylase Kinase; domain 1 85 180 - -
Sto3g1587 635 MobiDBLite consensus disorder prediction 401 431 - -
Sto3g1587 635 PANTHER CELL DIVISION PROTEIN KINASE 533 628 - -
Sto3g1587 635 PANTHER CELL DIVISION PROTEIN KINASE 30 534 - -
Sto3g1587 635 Gene3D Transferase(Phosphotransferase) domain 1 181 420 - -
Sto3g1587 635 SMART serkin_6 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g1587 635 Pfam Protein kinase domain 98 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g1587 635 MobiDBLite consensus disorder prediction 483 502 - -
Sto3g1587 635 MobiDBLite consensus disorder prediction 441 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1587 Sto-Chr3 11815092 11820099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1587 90 442 Core Cell Cycle Gene Families AT5G10270 48.238 1.85e-113 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sto3g1587 Pkinase 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1587 - - gmx:100803328 1051.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1587 3 11815092 11820099 Sto12g0929 12 5752298 5756382 ECH
Sto3g1587 3 11815092 11820099 Sto3g1587 3 11815092 11820099 ECH