Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1583 ATGGCGGAGGAGGAGGAGTCGGCGGCTTCATCTTGTTTCACTCTGTTGAGCACGGACGGTCTTGATGACGTGGACGACTACGTTCTGGCAAATGAACCGGAGGACTTGACAAGGGAAACATTCGAACATGTCTTTGAACTTGTGCAGAATGGCAATTTGGCATTTCGGAATAACCGAATGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAGCATCAAGACTGGTGATCCTGTTATACTCAGCAACCGAAGTAAAGCATATATCAGGATAAGCCAATCTCTAAAGCAAAGATCCCCATCAGCTTCAGAATATAACTCATTGAGTGGGCTTGATCCTACAACACATGCTGAACTTGGTTTAAAGGATGCAGAGAAGCTTGTTGACATCCAAAGTAATTCAGTAAAATCATACATTTTAAAGGCCAATGCTCTTTTTCTGTTGGAGAAATATGATATGGCCAGGGATGTTATTCTTTCAGGCCTTCAAGTCAATCCCCTTAGTAAATCTCTTCAGGCTTCTCTTTCAAATTTGAAAAGAGCATCAGCTAGTTTAGCACGTATAAGTACACATGAACAGGCAGAGCGCACTGATGACTTTGATTGCACTCTTTGCCTCAAGTTACTTTACGAACCTGTTACAACCCCCTGTGGACATTCGTTTTGTCGTTCATGTCTATTTCAGTCGATGGATCGTGGCAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACATGTTCCGTCAGTGTGACATTGAAGAACATTATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGCTAGAGAATGACAATTTGACCAACCCTGGCTTTGATTTAATTCCTCTTTTTGTCATGGATGTTGTTATTCCATGTCAAAAGTTTCCACTCCATATATTTGAACCACGTTATAGACTGATGATAAGAAGAATAATGGAAGGAAATCGTCGGATGGGAATGGTTATCATTGATTCTGCAACAAATTCCCTTGCTGAATTTGCCTGTGAAGTAGAAATCACTGAGTGTGAACCTCTTCCAGATGGACGTTTCTATATAGAGtTACAAGAAATTACATTTAACGCAGCAGAGAGTGCTCGATCATGGATAAGAAGAGCTAAAGAAGCAGCAGGACCAGATCAAAGACGACTTGAGAGACTCCTGAATGTTGAAGCGATGATGCCCCCGCTGCAAGATCCTGAGCGTTTCAGTTTTTGGCTTGCTACCTTATCGAACCGGAGGCCTTCAGAAAAATTGGATCTCCTACGCTTGACAGATACCAAAGAGTGGGATCAGTATAACTTACTGTAG 1323 0.418 MAEEEESAASSCFTLLSTDGLDDVDDYVLANEPEDLTRETFEHVFELVQNGNLAFRNNRMEEAINFYSRANSIKTGDPVILSNRSKAYIRISQSLKQRSPSASEYNSLSGLDPTTHAELGLKDAEKLVDIQSNSVKSYILKANALFLLEKYDMARDVILSGLQVNPLSKSLQASLSNLKRASASLARISTHEQAERTDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSVSVTLKNIIQKNFPEEYAERKLENDNLTNPGFDLIPLFVMDVVIPCQKFPLHIFEPRYRLMIRRIMEGNRRMGMVIIDSATNSLAEFACEVEITECEPLPDGRFYIELQEITFNAAESARSWIRRAKEAAGPDQRRLERLLNVEAMMPPLQDPERFSFWLATLSNRRPSEKLDLLRLTDTKEWDQYNLL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1583 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 281 IPR013083 -
Sto3g1583 440 SMART ring_2 202 239 IPR001841 -
Sto3g1583 440 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Sto3g1583 440 ProSiteProfiles Zinc finger RING-type profile. 202 240 IPR001841 -
Sto3g1583 440 PANTHER RING FINGER PROTEIN 127 359 433 - -
Sto3g1583 440 PANTHER RING FINGER PROTEIN 127 1 360 - -
Sto3g1583 440 Gene3D - 285 372 IPR046336 -
Sto3g1583 440 SUPERFAMILY PUA domain-like 286 432 IPR015947 -
Sto3g1583 440 SUPERFAMILY TPR-like 42 180 IPR011990 GO:0005515
Sto3g1583 440 Gene3D Tetratricopeptide repeat domain 30 183 IPR011990 GO:0005515
Sto3g1583 440 Pfam ATP-dependent protease La (LON) substrate-binding domain 286 360 IPR003111 -
Sto3g1583 440 Pfam Zinc finger, C3HC4 type (RING finger) 202 239 - -
Sto3g1583 440 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 359 433 - -
Sto3g1583 440 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 360 - -
Sto3g1583 440 SUPERFAMILY RING/U-box 197 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1583 Sto-Chr3 11751688 11760779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1583 190 243 C3H Transcription Factor Family AT1G74990 36.842 9.95e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1583 - - mnt:21391935 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1583 3 11751688 11760779 Sto3g1583 3 11751688 11760779 ECH