Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1581 ATGGAGATTGAGGGCCTTGATTTGAACAAAGTCTCTGCTGGTGCTGGAAATAATAGCAGGAGTAGTGATGGGTTTATTGATAGAAGCAAGGTGAAAATATTGTTGTGCGATAATAATACCAAGAGTTCACAAGAGGTTTTGACGCTTCTTTTGGGATGCTCTTATCaggTTACTTCGGTAAGGTCAGCAAGGCAGGTAATTGATGCGCTGAATGCAGAGGGGCAAGATATAGATATCATACTAGCTGAAGTTGACCTTCCAATGAAGAAGGGCATGAAGATGTTGAAGTACATTGCACGGGACAAAGACTTGCATCGAATTCCTGTTATAACATCAGATCCTAGTGATGCTAATACAAACAGTACCACTCTGTTCTCAGATGATACAGAGGAAGACAAGTCCAGGAGAAGCACTAATCCAGAGATAGGAATTTCAATCCAACAGGAACATGAGGCAAGTTCTATTGTTGCTATTTCTGTTGCTGATGTTCATGGGGAGTCTCAAGATGCTCGTGCATCAGAATATCGGCCTGATGTTCCTGGAATTAGTGATCGCCGAAAAGGACACTTTGCATCTGGACCAAAAAAGAGTGAACTAAGGATTGGTGAGTCATCGGCTTTCTTCAGTTATGTTAAATCAACCATGCAGAAGATCAACTCCCCAGGGATTGCTCGAGTTGACAGTAATGCTGCTACACCTTCGAGGATTGAAGACATGCGTCAAGCATGTGCTCAACAGGTGGTTTATGACCTTCAAACACATGAAAATGGAGAGACATATGAAAGCCCTTCTCAAGATGACTTACCCAGCAGTAACAGTATTCCTGATTCTTTCTCCGTTGAGAGGTCTTCTACCCCACCTGCATCAATGGAAATTCTAAAGCAAAAGCACGTCAAGGAAGATCATTTACCTCATGGTATGATCCATCAGAGAAATGGAACTCATGGTTCTGAAACTGAAGTATCCGGGGTTGTTAATCACGTTCTGATGCCATCCTCATCACAATTGTATCTGAAGAATCTCCAGGACCTACAGAATCATGCTAGTACCACTATGATTGCACAGTACAATAATATTTCCCAATGTCCTCCTCATGCAACCAGGATAGCTTCCTTCCCATATTACCCAATGAATTTATGCTTACAACCTGGTCAGATGTCTTCAGCTCATTCATGGCCATCATATGGAAGTTCAAGTTCATCCGAAGTAAAATTGAATAATAAAGTCGATAGAAGGGAAGCGGCATTGATGAAGTTTAGACAGAAAAGGAAAGAGCGTTGCTTCGACAAGAAAATTAGGTATGTCAATAGGAAGCGACTTGCTGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGATATGTCAGAGTTGATGATCCAATCTGTAACATCAACAATAGAAGTTCAAACAAACTCTTTCCTGAATGATGCATCCTTACAAGCTCTTCGCGAATTTATTGCTCCGGCGAGTTGCATCGGATGCGACAGTAATTCAGCAAATCCCCAAATCCACGTCTCCACCGTCCACCGTTCTCGTTGTTGGAAGCGTTTCAGTTCACGCGTCTCATCTTCTTCTCGTCGTCTTCCTGTCATCTCTGCTCTTCCCGTCGTCTCTGCTCTGCTCTTCAAGCTCGTCTTCTCCACTCAACCCAGTCTTCAGAAATAG 1662 0.4302 MEIEGLDLNKVSAGAGNNSRSSDGFIDRSKVKILLCDNNTKSSQEVLTLLLGCSYQVTSVRSARQVIDALNAEGQDIDIILAEVDLPMKKGMKMLKYIARDKDLHRIPVITSDPSDANTNSTTLFSDDTEEDKSRRSTNPEIGISIQQEHEASSIVAISVADVHGESQDARASEYRPDVPGISDRRKGHFASGPKKSELRIGESSAFFSYVKSTMQKINSPGIARVDSNAATPSRIEDMRQACAQQVVYDLQTHENGETYESPSQDDLPSSNSIPDSFSVERSSTPPASMEILKQKHVKEDHLPHGMIHQRNGTHGSETEVSGVVNHVLMPSSSQLYLKNLQDLQNHASTTMIAQYNNISQCPPHATRIASFPYYPMNLCLQPGQMSSAHSWPSYGSSSSSEVKLNNKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFDMSELMIQSVTSTIEVQTNSFLNDASLQALREFIAPASCIGCDSNSANPQIHVSTVHRSRCWKRFSSRVSSSSRRLPVISALPVVSALLFKLVFSTQPSLQK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1581 553 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Sto3g1581 553 Gene3D - 25 130 - -
Sto3g1581 553 Pfam CCT motif 412 451 IPR010402 GO:0005515
Sto3g1581 553 MobiDBLite consensus disorder prediction 167 196 - -
Sto3g1581 553 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 6 110 - -
Sto3g1581 553 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 110 460 - -
Sto3g1581 553 ProSiteProfiles CCT domain profile. 412 454 IPR010402 GO:0005515
Sto3g1581 553 SUPERFAMILY CheY-like 29 111 IPR011006 -
Sto3g1581 553 MobiDBLite consensus disorder prediction 166 196 - -
Sto3g1581 553 MobiDBLite consensus disorder prediction 257 287 - -
Sto3g1581 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 110 IPR045279 GO:0009736
Sto3g1581 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR 110 460 IPR045279 GO:0009736
Sto3g1581 553 MobiDBLite consensus disorder prediction 109 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1581 Sto-Chr3 11729822 11741634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1581 88 451 Response Regulator Gene Family AT5G61380 34.607 1.40e-49 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Sto3g1581 CCT 3.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1581 K12127 - gmx:100786522 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1581 3 11729822 11741634 Sto3g1581 3 11729822 11741634 ECH