Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1576 ATGGAAACTGAAGAGATTGAAAGAGTTGGGAGATTCCGTTCTGTATCCAATTTGATTTTGTGCGCCATTTCTGGAGCTCTCACCGGATGTTTTGCCATTGCCGGAGCCATCACCGGAGCTATTGCCGGTGCTTTAGCAAGTAGGGCTTCTGAGAGTGGTTTCCTTCGTGGAGCTTCATTAGGTGCCATTGCTGGAGCTATAATATCTGTTGAGGTGTTAGAAGCTTCCCGTGCCTATTGGTGCTTAGAGCAAACTGGTTCAAGAAGTTCATCATCCATGGCAGATTTTGTAGAGCAACTTGTTCGTGGGAGGCTTGTAGAGGAACAATATACACCAGCTATGTTAACTGCTTACAGTTGGCAGGTTCAGCAGGTTGGGGTTGCAAATTTAGGCTACGATGAGATTCATGATGTTCATAGCTTAGTATCATCCAGAGGATTGTCAGGAGATTCGTTGAAGAAGTTACCACAGCATGTGATCTTAAAGGACACGAAGTCAGAGAGTATCTGCTGCACAATATGTTTGCAGGATATAGAAGTAGGAGAAACTGCAAGGAGCTTACCTCGCTGTCATCATACATTTCATTTGAACTGTGTGGACAGATGGCTTGTGAAGAATGATTCATGTCCTGTGTGCAGACAAGATGTATAG 651 0.4439 METEEIERVGRFRSVSNLILCAISGALTGCFAIAGAITGAIAGALASRASESGFLRGASLGAIAGAIISVEVLEASRAYWCLEQTGSRSSSSMADFVEQLVRGRLVEEQYTPAMLTAYSWQVQQVGVANLGYDEIHDVHSLVSSRGLSGDSLKKLPQHVILKDTKSESICCTICLQDIEVGETARSLPRCHHTFHLNCVDRWLVKNDSCPVCRQDV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1576 216 Pfam Ring finger domain 171 213 IPR001841 -
Sto3g1576 216 CDD RING-H2_PA-TM-RING 170 213 - -
Sto3g1576 216 SUPERFAMILY RING/U-box 152 216 - -
Sto3g1576 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 216 IPR013083 -
Sto3g1576 216 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 4 215 - -
Sto3g1576 216 SMART ring_2 171 212 IPR001841 -
Sto3g1576 216 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 4 215 IPR044523 -
Sto3g1576 216 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1576 Sto-Chr3 11696617 11700003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1576 14 216 C3H Transcription Factor Family AT1G74410 58.333 3.88e-76 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1576 - - gmx:100800105 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1576 3 11696617 11700003 Sto3g1576 3 11696617 11700003 ECH