Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1569 ATGGATTTGCCTCCTGGGTTCCGATTTCACCCAACTGATGAAGAGCTCATAACTCATTATCTCTACACCAAGGTCAATGATAGCAGCTTCTCTGCTCGAGCCATTGGAGAGGTGGACTTGAACAGGTCTGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGAGAGAAAGAATGGTACTTTTTCTGTGTTAGAGACAGGAAATACCCAACTGGGCTGAGAACGAACAGAGCCACTGAAGCAGGGTACTGGAAAGCCACAGGGAAAGACAGAGAGATTTACAGAGGGAAATCTCTGGTGGGGATGAAGAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCAAAAGGCGAAAAGACGAACTGGGTCATGCATGAGTATAGATTAGAGGGTAAATTCTCCATCCACAACCTCCCAAAAACCGCAAAGAACGAGTGGGTGATTTGTAGGGTGTTCCAGAAGAATTCAGGAGGGAAGAAAACCCATATCTCTGGGATAATGAGGTTGGAATCCATAGGGAACGAATTGGGTTCTTCTGGTTTACCCCCACTCACAgattcttcctcctcttctagACCTCTTCTCATGACTGAATCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGCTCAAAGAAACCACCAAGACCACACCATCCTCAGAGCCTTACTTGCACCAAGCTCAAACTTTAGGAATGGCTTCAAAACAGAAATGAACCCTGAGATTTCCTCTGTGGTTTCAAGTTTTGGTTTGGGAAATAGGAGGGCTTTTGAGAATCAGCAAAACCCACTTCCAAATCCAAACCCTTCCTCTGTTTCTGCAGCAATGGACCTTGATACACTCTGGAATTactga 855 0.4456 MDLPPGFRFHPTDEELITHYLYTKVNDSSFSARAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDREIYRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSIHNLPKTAKNEWVICRVFQKNSGGKKTHISGIMRLESIGNELGSSGLPPLTDSSSSSRPLLMTESAYVPCFSNPIDAQRNHQDHTILRALLAPSSNFRNGFKTEMNPEISSVVSSFGLGNRRAFENQQNPLPNPNPSSVSAAMDLDTLWNY 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1569 284 Pfam No apical meristem (NAM) protein 4 128 IPR003441 GO:0003677|GO:0006355
Sto3g1569 284 SUPERFAMILY NAC domain 2 153 IPR036093 GO:0003677|GO:0006355
Sto3g1569 284 ProSiteProfiles NAC domain profile. 3 153 IPR003441 GO:0003677|GO:0006355
Sto3g1569 284 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 1 212 - -
Sto3g1569 284 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 212 - -
Sto3g1569 284 Gene3D NAC domain 12 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1569 Sto-Chr3 11638219 11639384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1569 1 284 NAC Transcription Factor Family AT5G07680 55.793 1.16e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto3g1569 NAM 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1569 - - cam:101502392 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1569 3 11638219 11639384 Sto12g0915 12 5679982 5681260 ECH
Sto3g1569 3 11638219 11639384 Sto3g1569 3 11638219 11639384 ECH