Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1562 atggaattTTGGGGGCTTCGTCTTGTGCTTCTAATTATGGTGGTGGGATCATCTCCTTATTATAGCCACCAATTCGATGATGAAGGTTGGATCAATGCTCACGCCACCTTCTATGGAGGAGGTGGAGCTTGTGGATATGGAAATTTGTACAGCCAAGGGTATGGAACGGAGACGGCGGCTCTGAGCACGGCGTTGTTCGATAACGGCGAGAGGTGCGGTGCGTGCTTCGAAATAAAGTGTGTGGATGACGAAAGGTGGTGCCTTGAAGGGTCAGTGGTAGTGACAGCCACCAATTTCTGTCCGCCAACCTTAGCAAATGACGCAGGAGGATGGTGTAATCCTCCTCTTCAACATTTTGATCTGTCTCAGCCTGTTTTCCTCCAGATTGCTCATTACAGAGCTGGGATTgATGTTCTCCCTTGGGTGCCATGCAAAAGGAAAGGAGGCATCAAATTCACCATGAACGGCCATTCTTACTTCAACCTCATCCTCATCACCAACGTCGGCGGCGCCGGCGATGTTCAGGCGGTTTCCATCAAAGGCTCAAAAACCAATAAATGGGAAGCCATGTCTAGaaattggggtcaaaattgGCAAACCAACACATACCTTAATGGACAAAGCATTTCCTTTAAGGTAACCACTAGTGACGGACACACCCTAGTTTCTTCCAATGTTGTCCCTCCTGCCTGGTCCTTTGGCCAGACTTTCATAGGCCAACAATTCCCATGA 732 0.4727 MEFWGLRLVLLIMVVGSSPYYSHQFDDEGWINAHATFYGGGGACGYGNLYSQGYGTETAALSTALFDNGERCGACFEIKCVDDERWCLEGSVVVTATNFCPPTLANDAGGWCNPPLQHFDLSQPVFLQIAHYRAGIDVLPWVPCKRKGGIKFTMNGHSYFNLILITNVGGAGDVQAVSIKGSKTNKWEAMSRNWGQNWQTNTYLNGQSISFKVTTSDGHTLVSSNVVPPAWSFGQTFIGQQFP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1562 243 PANTHER EXPANSIN 21 242 - -
Sto3g1562 243 Pfam Expansin C-terminal domain 150 228 IPR007117 -
Sto3g1562 243 SUPERFAMILY Barwin-like endoglucanases 29 167 IPR036908 -
Sto3g1562 243 PRINTS Expansin signature 53 67 IPR002963 GO:0009664
Sto3g1562 243 PRINTS Expansin signature 80 91 IPR002963 GO:0009664
Sto3g1562 243 PRINTS Expansin signature 92 102 IPR002963 GO:0009664
Sto3g1562 243 PRINTS Expansin signature 109 126 IPR002963 GO:0009664
Sto3g1562 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Sto3g1562 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Sto3g1562 243 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Sto3g1562 243 PRINTS Expansin signature 225 241 IPR002963 GO:0009664
Sto3g1562 243 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Sto3g1562 243 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Sto3g1562 243 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Sto3g1562 243 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Sto3g1562 243 PANTHER EXPANSIN-A15 21 242 IPR002963 GO:0009664
Sto3g1562 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 239 IPR007117 -
Sto3g1562 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 149 IPR007112 -
Sto3g1562 243 SUPERFAMILY PHL pollen allergen 146 238 IPR036749 -
Sto3g1562 243 Pfam Lytic transglycolase 58 136 IPR009009 -
Sto3g1562 243 Gene3D - 144 242 IPR036749 -
Sto3g1562 243 SMART dpbb_1 58 141 IPR007112 -
Sto3g1562 243 Gene3D - 16 143 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1562 Sto-Chr3 11565865 11569998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1562 1 242 Expansin Gene Family AT2G03090 64.822 3.16e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1562 - K20628 mnt:21389918 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2799 8 20286865 20289337 Sto3g1562 3 11565865 11569998 ECH
Sto3g1562 3 11565865 11569998 Sto3g1562 3 11565865 11569998 ECH