Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1560 ATGGCACCCACCTCTGCAATAATTAAGCTCTTCGGACAGAGGATTCTGTTGAAGGATGATTCTACCATTTCAAAAACGTTTCCTCAAGGTGAAGACATAGAAGGAGAACCAAAAGTACCAGAAGAAGCAGACAATAAgGAATCTCGGGCGGGAAAAGTCACAAATACCCCTGAAAAGGAGGAGGAGATTCTGAAGAAGCCAGACAATAAAGTGAAGATTCCATGCGCTCGTTGCAAAAGTATTGACACAAAATTCTGTTACTACAACAACTACAACATCAAACAGCCTCGCTATTTCTGCAAATCCTGTCGAAGGTACTGGACTCATGGTGGAGCCATCAGGAACGTTCCAGAAGGTtcaggaagaagaaagaacaaCAACACTACTCCTTCCACCTCCTCCCATGATCACCACATCACCATTTCCGAGGCTCTTCAAGCAATCGATGTTCCTAATAATGAAAAAGTCCTCAGCTTTACAAGTACTGCCCCAAATCGATTTCCTCCAACCTTAAAGTCTCCAACTTTATTAGGGAAGCATTGGAGGGAAGGGGATATGATGATGAAAGCAGAGTataaggagaaggaagaagaaggttgGAAGAAGGAACCATGGTGGTTAGGGAGTGAAGGGGGCATGTTTGAGGCGTTTGAatcatggaagaagaagcagaaggagAGTGATGGGGTTGAATTAGAAGCATCTCATGATCATGTGGCATTGAGGGCTAATCCTGCAGCCTTGTGCAGATCCCTTagatttcatgaaaactctCATTGA 780 0.3949 MAPTSAIIKLFGQRILLKDDSTISKTFPQGEDIEGEPKVPEEADNKESRAGKVTNTPEKEEEILKKPDNKVKIPCARCKSIDTKFCYYNNYNIKQPRYFCKSCRRYWTHGGAIRNVPEGSGRRKNNNTTPSTSSHDHHITISEALQAIDVPNNEKVLSFTSTAPNRFPPTLKSPTLLGKHWREGDMMMKAEYKEKEEEGWKKEPWWLGSEGGMFEAFESWKKKQKESDGVELEASHDHVALRANPAALCRSLRFHENSH 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1560 259 MobiDBLite consensus disorder prediction 114 136 - -
Sto3g1560 259 Pfam Dof domain, zinc finger 73 127 IPR003851 GO:0003677|GO:0006355
Sto3g1560 259 MobiDBLite consensus disorder prediction 31 61 - -
Sto3g1560 259 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Sto3g1560 259 MobiDBLite consensus disorder prediction 120 136 - -
Sto3g1560 259 MobiDBLite consensus disorder prediction 22 61 - -
Sto3g1560 259 PANTHER CYCLIC DOF FACTOR 2 212 257 IPR045174 GO:0003700|GO:0006355
Sto3g1560 259 PANTHER CYCLIC DOF FACTOR 2 28 160 IPR045174 GO:0003700|GO:0006355
Sto3g1560 259 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Sto3g1560 259 PANTHER CYCLIC DOF FACTOR 1 28 160 - -
Sto3g1560 259 PANTHER CYCLIC DOF FACTOR 1 212 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1560 Sto-Chr3 11555816 11556812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1560 8 256 C2C2-Dof Transcription Factor Family AT5G62430 35.873 6.31e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto3g1560 zf-Dof 6.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1560 - K16222 cpap:110810104 142.124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3012 6 37228473 37231053 Sto3g1560 3 11555816 11556812 CCT
Sto3g1560 3 11555816 11556812 Sto12g0910 12 5640707 5643275 ECH
Sto8g2802 8 20315196 20317580 Sto3g1560 3 11555816 11556812 ECH
Sto13g1769 13 25136405 25139584 Sto3g1560 3 11555816 11556812 ECH
Sto11g0936 11 9845216 9847904 Sto3g1560 3 11555816 11556812 ECH
Sto6g3012 6 37228473 37231053 Sto3g1560 3 11555816 11556812 ECH
Sto3g1560 3 11555816 11556812 Sto3g1560 3 11555816 11556812 ECH