Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1551 ATGATGGGAAGACCGCCTTGCTGCGACAAAATTGGGATTAAGAAAGGCCCTTGGACTCCCGAAGAAGACATCATCTTGGTCTCTTACATTCAACAACACGGCCCCGGCAATTGGAGATCTGTTCCCACCAATACTGGATTGATGAGATGCAGCAAAAGTTGCAGACTCCGATGGACCAATTACCTCCGTCCCGGGATCAAACGCGGTAACTTCACCGATCACGAAGAGAAGATGATCGTCCACCTCCAAGCTCTTCTCGGCAACAGatgggCGGCCATAGCATCGTATCTACCCCAGAGGACGGATAACGACATCAAGAATTACTGGAATACCCACCTCAAGAAGAAGCTCAAGAGAGGAGAAGCGGAGGGCAGTGATAGTAATAATCACAATAATAACGGTAGCGACCATCAGGATTACTCCTGTTCCGGTTCTTCCAACCCGAACAAGGGTCAGTGGGAGAGAAGGCTTCAAACCGATATCCACATGGCAAGACAAGCCTTGTGCCACGCGCTGTCTCTTGACAATCCCActcccaccaccaccattaCGACGTCGTACGATGCTAAGCCGCCCCCGATGAATTCTTCCTATCCCTATCCTGACCCCAACCAAACAGCGTTATCCTCCTCCTATTCGGGATCCGGATACGCCTCCAGCGCCGACAACATAGCCCGCCTGCTCCAGAACTGGATGCCCAAAACCCCCAATAATCACAATCCAAACCCCAACTCATCCGCCTCTAGCGCCGACGGACTCGGGGTGAGCCCCGACCATCATCTCCACGACTATACTTCTCTCTTGACCTTCAATAATAACCACCATCACAACTCCGATGTGTGCACGGAGAGTAGTACCAGTCTGTTCCACGACGAAACCAAGCCCAGCCTCGAGACGACGTCGTCCGAGGGGCAGGATCCTGTGCCTCTCACGCTACTCGAGAAATGGCTCTTCGATGAGGCCGCGCCAACAACGCCCACTCATCATCATCACGATGATCTCATCAACATCTCACCGCCCTTGTTCTAG 1029 0.5141 MMGRPPCCDKIGIKKGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKRGEAEGSDSNNHNNNGSDHQDYSCSGSSNPNKGQWERRLQTDIHMARQALCHALSLDNPTPTTTITTSYDAKPPPMNSSYPYPDPNQTALSSSYSGSGYASSADNIARLLQNWMPKTPNNHNPNPNSSASSADGLGVSPDHHLHDYTSLLTFNNNHHHNSDVCTESSTSLFHDETKPSLETTSSEGQDPVPLTLLEKWLFDEAAPTTPTHHHHDDLINISPPLF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1551 342 Gene3D - 14 67 - -
Sto3g1551 342 SMART sant 14 64 IPR001005 -
Sto3g1551 342 SMART sant 67 115 IPR001005 -
Sto3g1551 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Sto3g1551 342 MobiDBLite consensus disorder prediction 119 152 - -
Sto3g1551 342 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Sto3g1551 342 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Sto3g1551 342 Gene3D - 69 141 - -
Sto3g1551 342 MobiDBLite consensus disorder prediction 231 252 - -
Sto3g1551 342 MobiDBLite consensus disorder prediction 231 257 - -
Sto3g1551 342 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Sto3g1551 342 MobiDBLite consensus disorder prediction 126 152 - -
Sto3g1551 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Sto3g1551 342 CDD SANT 70 113 IPR001005 -
Sto3g1551 342 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Sto3g1551 342 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Sto3g1551 342 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 2 331 - -
Sto3g1551 342 MobiDBLite consensus disorder prediction 179 211 - -
Sto3g1551 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 331 - -
Sto3g1551 342 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1551 Sto-Chr3 11475642 11476808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1551 2 322 MYB Transcription Factor Family AT5G62470 54.203 5.77e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto3g1551 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1551 K09422 - cit:102626104 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1551 3 11475642 11476808 Sto3g1551 3 11475642 11476808 ECH