Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1533 ATGTCTAGTAGAAGAAGAAGCTCCATAGCTTCAAAACTCACAGAGGATGAGATCAATGAGCTTGTTTCAAGGTTAAAAGCAGTGCTTCCACAGCTCAACCAAACAACCAACTCAAAGGTATCAATATCAAAGATGTTGAAAGAAAGTTGCTGTCACATAAAGAGGCTTCAGAAAGAGGTGGAAGAGCTTAGTGAGAGGCTATCAGGGCTTATGGAATCAGTGAACATTAGTGAGATTGACGAACAAAGTCTTAGAAACTTATTACAACAATAA 273 0.3846 MSSRRRSSIASKLTEDEINELVSRLKAVLPQLNQTTNSKVSISKMLKESCCHIKRLQKEVEELSERLSGLMESVNISEIDEQSLRNLLQQ 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1533 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 2 56 IPR011598 GO:0046983
Sto3g1533 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 74 IPR036638 GO:0046983
Sto3g1533 90 Coils Coil 46 73 - -
Sto3g1533 90 PANTHER DNA BINDING PROTEIN 1 90 - -
Sto3g1533 90 Pfam Helix-loop-helix DNA-binding domain 16 57 IPR011598 GO:0046983
Sto3g1533 90 PANTHER DNA BINDING PROTEIN 1 90 IPR044172 -
Sto3g1533 90 Gene3D - 2 87 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1533 Sto-Chr3 11341162 11341543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1533 3 75 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 48.649 1.36e-16 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g1533 HLH 0.00016 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1533 - - gmx:100790746 101.293