Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1524 ATGTCTAGCAGAAGATCGAGGTCAAGACAATCCAGTGGTTCAAGAACCATCACTGACGATCAGATCAACGATCTCGTTTCTAAGTTGCAGCAACTTCTTCCTGAGATTCGCAATGCCCCTTCTGATAAGGTATCAGCAGCGAAGGTGTTACAAGAGACATGCAACTACATCAGAAATTTACACAGAGAAGTGGACGATCTAAGTGAACGTTTGTCCGAGCTCTTGGCTACAACCGACACTGCTCAAGCTGCAATTATCAGAAATTTACTTATGCaatag 279 0.4301 MSSRRSRSRQSSGSRTITDDQINDLVSKLQQLLPEIRNAPSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1524 92 Coils Coil 57 77 - -
Sto3g1524 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Sto3g1524 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Sto3g1524 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Sto3g1524 92 MobiDBLite consensus disorder prediction 1 20 - -
Sto3g1524 92 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Sto3g1524 92 Gene3D - 19 88 IPR036638 GO:0046983
Sto3g1524 92 CDD bHLH_AtPRE_like 17 77 - -
Sto3g1524 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1524 Sto-Chr3 11264336 11266149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1524 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.892 1.36e-38 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g1524 HLH 4.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1524 - - gmx:100527636 148.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g1978 8 12792304 12793444 Sto3g1524 3 11264336 11266149 ECH
Sto11g0976 11 10135204 10135574 Sto3g1524 3 11264336 11266149 ECH
Sto3g1524 3 11264336 11266149 Sto3g1524 3 11264336 11266149 ECH