Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1523 ATGCAGCAGGAGAACCCTATGATTCCCAATAAATCTGGAAATTGCATTCGGAGAAGCAGTCTATGTGCCGCCTTTTCAAGAGCCTCCCTTCCTCTCATGGGAAATTGCTTCCAACCTCGTTCCAAAATTGATGCTTCGCGACCTATTTCTGAGGATTGCTTATTCCCAATTTCTGGGAAGGTTATACCTGTCATTTTTGGGATATCTGTTGTTCCCATGATTGTTTTATATGCTATAACAGCTCCTAGTAGAAGCAGCCATTCATATGCTCATTCAAGCACAGCGCATGGATACAGTGATAATGGTAAACCTAGGGTTCTCCCCAATCCAAGATCTGAAGTTGAAATACTTTCCTCTCCACACTTGAAAGCCTTCACACTCAATGAGCTTAGGAATGTTACTAGAAACTTTTGTCCTGATAGTCTACTGGGGGAAGGGGGATTTGGTGATGTGTACAAGGGTTGGATTGACGAAAAGACCCTTGGAGCTTCAAGGCCTGGATCTGGTATGCCTGTGGCTGTAAAGAAGCTAAAGATTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGtcTGAAGTCTATTATCTTGGCCAACTTCATCATCCAAATCTTGTTAAACTTCATGGATTCTGCCTAGATGGAGATAATCGGCTTTTGGTATATGAGTACATGTCCAACGGCAGCTTGGAAAATCATCTCTTCCGTAGGGGCGGAAAATCACTTTCTTGGGAAACAAGGATCAAAGTTGCGGTCGGTGCTGCTCGAGGCCTCACCTTGTTACACGACTCTGAACAACAAGTTATCTACCGAGATTTCAAGGCTGCTAATATTTTATTAGATTCGGAATTTAATGCAAAACTCTCAGATTTTGGTTTTGCTAAAGCAGGGCCTACTGGAGATTGTACTCATGTTTCCACTCAAGTTCTTGGTACTCAAGGCTACGCTGCTCCTGAATATATTGCTACAGGATGGCTTACTGCAAAGTGTGATGTGTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGACGGCGAGTCGTCGACAAAACGAGAGCTGGAGTTGAAAGGAATCTGCTAGATTGGGCAAGACCTTTTTTGGGAGATAGGAGGAAGCTATTCAGAATTATGGACACAAAGTTAGAAGGGCAGTACCCACAGAAGGCAGCTTATATAGCAGCAATTCTTGCACTACAGTGTATTAGTGAGGCCAAAATCAGACCCCAAATGTCAGAGGTTTTGGCTACTTTAGAACGGATTCAAATGTCCAGAACTACTGGTGGGAGATCCAGAGGAGGGAGGAGTCATAATGCAGAAACACATAATAATCAGCATTCAACAGAGAGAAGATCTGTGTCCAGTCAAATTGGTGATAGAACTGTGAATTCTCCATTGGGGTCCCCAAGAGGATCATATATGAAAAGTGGATGA 1428 0.4328 MQQENPMIPNKSGNCIRRSSLCAAFSRASLPLMGNCFQPRSKIDASRPISEDCLFPISGKVIPVIFGISVVPMIVLYAITAPSRSSHSYAHSSTAHGYSDNGKPRVLPNPRSEVEILSSPHLKAFTLNELRNVTRNFCPDSLLGEGGFGDVYKGWIDEKTLGASRPGSGMPVAVKKLKIEGFQGHKEWLSEVYYLGQLHHPNLVKLHGFCLDGDNRLLVYEYMSNGSLENHLFRRGGKSLSWETRIKVAVGAARGLTLLHDSEQQVIYRDFKAANILLDSEFNAKLSDFGFAKAGPTGDCTHVSTQVLGTQGYAAPEYIATGWLTAKCDVYSFGVVLLELLSGRRVVDKTRAGVERNLLDWARPFLGDRRKLFRIMDTKLEGQYPQKAAYIAAILALQCISEAKIRPQMSEVLATLERIQMSRTTGGRSRGGRSHNAETHNNQHSTERRSVSSQIGDRTVNSPLGSPRGSYMKSG 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1523 475 ProSiteProfiles Protein kinase domain profile. 137 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g1523 475 SUPERFAMILY Protein kinase-like (PK-like) 114 418 IPR011009 -
Sto3g1523 475 Gene3D Transferase(Phosphotransferase) domain 1 223 439 - -
Sto3g1523 475 MobiDBLite consensus disorder prediction 446 469 - -
Sto3g1523 475 PANTHER OS01G0588500 PROTEIN-RELATED 85 447 - -
Sto3g1523 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Sto3g1523 475 MobiDBLite consensus disorder prediction 423 475 - -
Sto3g1523 475 Pfam Protein tyrosine and serine/threonine kinase 142 346 IPR001245 GO:0004672|GO:0006468
Sto3g1523 475 ProSitePatterns Protein kinases ATP-binding region signature. 143 176 IPR017441 GO:0005524
Sto3g1523 475 PANTHER BNAC02G17010D PROTEIN 85 447 - -
Sto3g1523 475 Gene3D Phosphorylase Kinase; domain 1 109 222 - -
Sto3g1523 475 CDD STKc_IRAK 143 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1523 Sto-Chr3 11257400 11261629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1523 82 416 Glycoside Hydrolase AT3G07070 49.856 8.26e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sto3g1523 PK_Tyr_Ser-Thr 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1523 - - jre:108995487 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1523 3 11257400 11261629 Sto12g0880 12 5510661 5512827 ECH
Sto8g1974 8 12748464 12750879 Sto3g1523 3 11257400 11261629 ECH
Sto3g1523 3 11257400 11261629 Sto3g1523 3 11257400 11261629 ECH