Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1517 ATGGAATTTGGCTTGGGAGTAATTAGATCTGGTCTTGAAGGTAGAAGAATCAAGCAAGAGAAGAGAAGTGAAGAATCTGATGGAGGTGATGAAGATGATGTTCATCCTAAAGAacaagacaataataatattcttGTCCAGgTTCCATCAATGGAGGATACGACTGGACCAACTGCATCTTCAACCAAAAAGGAAGAGgctGAGAAGCTTGAATGTGCAAAAGCGGAAATGGGAGAGGCGAAAGAAGAGAACGAAAGGTTGAAGCAGCATTTGGAGAGAGTTCTGAAGGATTATCGAAGCCTCCAAATGCAATTCCAGGATATAGTACAAAAAGAACCAAAACATATGAATATGATTACTTCTGAGGAATCTAATAAATTTGATGATGACCTAGTTTCTCTCAGCCTTGgaagatcatcatcatcatcatcaataatTCCGCCTAGAAACAATAAGATTGAAGAGTATAATAAAGAAGAAGCTGataatgatggtgatgatgatgatgagttgGCTCTTGGATTGGACTGCAAATTCCAAACCAATAATAATGAATTATTGACGACCAGGAATAGTAGTACTAGTGATGAGCCAAGTAATAACAATAAAGATGTCAAAAGAGTAGTGAGAGATGGTGGAGAAGATAATCATGAAGTTTCAcaacacaataataataatagtccTCCCAAGAAACCAAGAGTTTGTGTGAGGACAAGATGTGACACACCCactATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAGATTGCCAAGGGAAATCCTTGTCCAAGAGCTTACTATCGTTGTACTGTTGCACCATCATGCCCCGTTCAAAGATGTGCCGAGGACATGTCCATTCTCCTTACCACCTACGAAGGAAACCACAACCACCCTCTTCCTCTCTCAGCCACCGCCATGGCCTCCACCACTTCAGCCGCCGCTTCCATGCTCATGTCCGGCTCATTGCCGCCATCATCCTCATCCGCGGCCGCCACCACTTGTACGTCGGATCTCCGTGGCCTAAATTTCTACCTctccaacaacaacaacaataataataataataatcccaccctatcatcatcatcacattcACACCCAACAATCACTCTTGACCTCACCACCACAAGCCCATCTTCTAGAATATTCCACCCATCAAACTACTACAACCCAccaacatcatcatcattactATACCCTCCTTCTTATTCTTCTACGAGTCTCAACTTCAGTCACCCTaggaattataataataataataataacaataatgtgTCGTACCAGTACTACAATCACAATCATCATGTGCCTAATTATAATTACATGCAAAAGAACAGTAGTAGTACTATtgttcctccttcttcttcttcacatgaTGCTAATCTTCCGGCAGAGAGGATCGCGGCGGCGACCAAGGCGATCACGGCCGATCCCAAGTTCCATTCGGCCTTGGCCGTGGCGCTTAATTCTATATTTAATGGCGGCGCTGCGGAGAATTTGGGTCACGCCAAAATCAAATGGGGGGATCACCTGTTTCCAGCGTCTTCTTCTCtatag 1563 0.3749 MEFGLGVIRSGLEGRRIKQEKRSEESDGGDEDDVHPKEQDNNNILVQVPSMEDTTGPTASSTKKEEAEKLECAKAEMGEAKEENERLKQHLERVLKDYRSLQMQFQDIVQKEPKHMNMITSEESNKFDDDLVSLSLGRSSSSSSIIPPRNNKIEEYNKEEADNDGDDDDELALGLDCKFQTNNNELLTTRNSSTSDEPSNNNKDVKRVVRDGGEDNHEVSQHNNNNSPPKKPRVCVRTRCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVQRCAEDMSILLTTYEGNHNHPLPLSATAMASTTSAAASMLMSGSLPPSSSSAAATTCTSDLRGLNFYLSNNNNNNNNNNPTLSSSSHSHPTITLDLTTTSPSSRIFHPSNYYNPPTSSSLLYPPSYSSTSLNFSHPRNYNNNNNNNNVSYQYYNHNHHVPNYNYMQKNSSSTIVPPSSSSHDANLPAERIAAATKAITADPKFHSALAVALNSIFNGGAAENLGHAKIKWGDHLFPASSSL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1517 520 MobiDBLite consensus disorder prediction 200 218 - -
Sto3g1517 520 MobiDBLite consensus disorder prediction 184 234 - -
Sto3g1517 520 Coils Coil 63 104 - -
Sto3g1517 520 MobiDBLite consensus disorder prediction 40 61 - -
Sto3g1517 520 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 500 IPR044810 GO:0003700
Sto3g1517 520 SUPERFAMILY WRKY DNA-binding domain 237 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto3g1517 520 MobiDBLite consensus disorder prediction 184 199 - -
Sto3g1517 520 MobiDBLite consensus disorder prediction 349 379 - -
Sto3g1517 520 Pfam WRKY DNA -binding domain 246 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto3g1517 520 ProSiteProfiles WRKY domain profile. 240 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto3g1517 520 MobiDBLite consensus disorder prediction 62 87 - -
Sto3g1517 520 MobiDBLite consensus disorder prediction 1 87 - -
Sto3g1517 520 MobiDBLite consensus disorder prediction 13 39 - -
Sto3g1517 520 SMART WRKY_cls 245 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto3g1517 520 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 39 500 - -
Sto3g1517 520 Gene3D WRKY domain 230 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1517 Sto-Chr3 11204648 11208858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1517 69 496 WRKY Transcription Factor Family AT1G18860 44.124 6.17e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sto3g1517 WRKY 2.4e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1517 - - gmx:100804403 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1517 3 11204648 11208858 Sto12g0878 12 5495888 5499460 ECH
Sto11g0989 11 10245642 10247095 Sto3g1517 3 11204648 11208858 ECH
Sto3g1517 3 11204648 11208858 Sto3g1517 3 11204648 11208858 ECH