Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1511 ttgttgttgttgatatTTTGTGTAGTGTGTTATAGTGTGAGAGGGAACATTGGGGATTTTGATGAACATTGGAAGCAAAGATCTAATGAGGCCAAGCAAGCAGCTCAAGATGCTTATAGGCCTGACCCTTACAATGTCACTCAACAATTCAATTCTCATGTCCGCATGGCTATGGAAGGCATCAACAAAACAAGAAGGGAGTTGAAGCAACGAAAATCTGCAGGTCCATGTGTGGCCACCAACCCCATTGACAAGTGCTGGAGATGTGACCCTAACTGGGAGAAGAACCGCAAGCGGCTCGCCGATTGCGCCATCGGCTTCGGCCAGGGCACCACGGGAGGCAAAGCCGGCCGCATCTACGTCGTCACGGACCCCTCCGACAACGACGtggtaaaccccaaacccggaACCCTAAGACACGCGGCGATCCAGCTGGAGCCGCTGTGGATCATCTTCGCTCACAGTATGACAATCAGGCTGTCCCAGGAGCTCCTGGTGACCAGCCACAAGACCATAGACGCGCGTGGTAGCTCCAATCCCACCATCATCAGCCAGGGCAATCGCTTCATTGCCCCTGCAAATCGTGATTGCAAACAGgtGACGAAGAGGGATTATGCACCTGAGAGTGTGTGGATGGGTTGGAATTGGAGATCGGAGAATGATTTGATGATGAATGGAGCCTTCTTTAAGGAGTCAGGAAGGCCAATGCCTCTTCCGAAGAATCATATCGCTGCACAGCCAGGAGCAATGGCTGCCTCTCTCACTCGCTTTTCTGGCTCTCTCAAATGTGTACCTAACAAGCCATGTTGA 810 0.4963 LLLLIFCVVCYSVRGNIGDFDEHWKQRSNEAKQAAQDAYRPDPYNVTQQFNSHVRMAMEGINKTRRELKQRKSAGPCVATNPIDKCWRCDPNWEKNRKRLADCAIGFGQGTTGGKAGRIYVVTDPSDNDVVNPKPGTLRHAAIQLEPLWIIFAHSMTIRLSQELLVTSHKTIDARGSSNPTIISQGNRFIAPANRDCKQVTKRDYAPESVWMGWNWRSENDLMMNGAFFKESGRPMPLPKNHIAAQPGAMAASLTRFSGSLKCVPNKPC 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1511 269 PRINTS Pollen allergen Amb family signature 163 179 IPR018082 -
Sto3g1511 269 PRINTS Pollen allergen Amb family signature 127 152 IPR018082 -
Sto3g1511 269 PRINTS Pollen allergen Amb family signature 103 120 IPR018082 -
Sto3g1511 269 PANTHER PECTATE LYASE 18-RELATED 3 177 IPR045032 GO:0030570
Sto3g1511 269 SUPERFAMILY Pectin lyase-like 176 262 IPR011050 -
Sto3g1511 269 Gene3D - 177 262 IPR012334 -
Sto3g1511 269 Gene3D - 80 176 IPR012334 -
Sto3g1511 269 PANTHER PECTATE LYASE 3 177 - -
Sto3g1511 269 Pfam Pectate lyase, N terminus 16 68 IPR007524 GO:0030570
Sto3g1511 269 PANTHER PECTATE LYASE 18-RELATED 176 269 IPR045032 GO:0030570
Sto3g1511 269 PANTHER PECTATE LYASE 176 269 - -
Sto3g1511 269 SUPERFAMILY Pectin lyase-like 52 177 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1511 Sto-Chr3 11153303 11156642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1511 176 269 Polysaccharide Lyase AT1G14420 48.544 4.21e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1511 K01728 - rcu:8287012 239.58