Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1506 ATGGTGAGCTTTGAAGATGTTCAAGGAGGGAAAGGGAGTAAGAGGTCGTCGTTCTTTAGCCCTTTTGATCATGACGATATGAACGGAGATGTTGAAGACATGGATGATTACTTTCTTCATCAACCTGAGAAGAAGAGGCGGCTCACTGCCGACCAAGTACAGTTTCTTGAGAGAAGCTTCGAGGTGGAGAACAAGCTTGAACCGGAGAGGAAGATTCAGCTAGCCAAGGACTCCGGCTTGCAGCCTCGCCAAGTCGCCATTTGGTTCCAGAACCGCCGTGCGCGGTGGAAGACCAAACAGCTCGAGAAGGATTATGAATCCTTGCAGGCTAGCTATGAGAATCTCAGAACTGACTATGATGGCCTTCTCAAGGAGAAAGAGAAGCTAAAAGCAGAGGTTGCAAATCTCACAGAGAAGGTGCTTCTGAGAGAGAAACAAGGGGGAAACTGCAATAAGCAGCAGAGTGATAGTGAAACAAGCAGATTTCAGGAaccccaaaatcaaaaaccttCCTCCATTGATACGACAACTTCTGAGGGAGAAGGCTCAAAAGTCTCTGTTGGGGGATGTAAGCAGGAAGACATAAGCTCGGCCAAGAGTGACATATTTGATTCAGATAGCCCACATTACACTGATGGAGTTCACTCTGCATCACTGTTAGAGCCAGGAGATTCTTCTTATGTATTTGAGCCTGATCAGTCTGATCTATCCCAGGATGAAGAAGATAACAACCTGATCAGCAAGACCCTATTTCCTTCATACATATTTCCAAAGCTTGAAGATGTTGATTACTCCGACCCGCCTGAAAGCTCATGTAGTTTTGGATTCCCAGTGGAAGATCATGCCTTCTGGTCATGGTCTTACTGA 867 0.4521 MVSFEDVQGGKGSKRSSFFSPFDHDDMNGDVEDMDDYFLHQPEKKRRLTADQVQFLERSFEVENKLEPERKIQLAKDSGLQPRQVAIWFQNRRARWKTKQLEKDYESLQASYENLRTDYDGLLKEKEKLKAEVANLTEKVLLREKQGGNCNKQQSDSETSRFQEPQNQKPSSIDTTTSEGEGSKVSVGGCKQEDISSAKSDIFDSDSPHYTDGVHSASLLEPGDSSYVFEPDQSDLSQDEEDNNLISKTLFPSYIFPKLEDVDYSDPPESSCSFGFPVEDHAFWSWSY 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1506 288 Pfam Homeodomain 44 97 IPR001356 GO:0003677
Sto3g1506 288 Gene3D - 39 107 - -
Sto3g1506 288 MobiDBLite consensus disorder prediction 1 25 - -
Sto3g1506 288 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Sto3g1506 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 285 IPR045224 GO:0003700
Sto3g1506 288 CDD homeodomain 44 100 IPR001356 GO:0003677
Sto3g1506 288 MobiDBLite consensus disorder prediction 147 183 - -
Sto3g1506 288 ProSitePatterns 'Homeobox' domain signature. 74 97 IPR017970 GO:0000981|GO:0006355
Sto3g1506 288 Coils Coil 91 146 - -
Sto3g1506 288 MobiDBLite consensus disorder prediction 145 242 - -
Sto3g1506 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 17 285 - -
Sto3g1506 288 SUPERFAMILY Homeodomain-like 29 101 IPR009057 -
Sto3g1506 288 SMART HOX_1 42 103 IPR001356 GO:0003677
Sto3g1506 288 Pfam Homeobox associated leucine zipper 99 140 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1506 Sto-Chr3 11122580 11123541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1506 42 286 Homeobox Transcription Factor Family AT3G01470 40.244 5.03e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto3g1506 Homeodomain 8.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1506 - - jre:108999210 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1506 3 11122580 11123541 Sto12g0870 12 5458342 5459274 ECH
Sto3g1506 3 11122580 11123541 Sto3g1506 3 11122580 11123541 ECH