Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1490 ATGTCCCAAGGATCTCCTCCCTTGGTCTCCACTGAACCCTCCTCCGACCGATCCTCGCCTGAACCCAATTCTCAAAACCACGTTCCCACTTCTAAGGAGGAAACCGCTGTCCCCGCCACTACGAGGAGCAACCGTCCGTCTCGAGCGTGCACCATTCGCGCTGCTTCTCGTCTTTATGGGTCGGGGCAGCCGGCGGCCATCGAGCGGGGGTCCAAAGCTTCCAAGAAGGAGCAGCGGCGGCGGGAGGAGTCgccggaggaggaggaggtgcaGCAGCAATGTAGTAAGATCGTGACGCCGCTTGTGGAACCGCCTTCGCCTTCGCAGTTGCCTCGGTGGAACCTGAGGTCCATGTGGGAGTTAGCTTCGATACTCAATTTCTTGCATGTGTTTAGGCCTCTTTTGAATATCTCTGTAGAATTCTCCGCGGAAGAATTCGAGACAGCTCTACTTACGCCCAATGACACCTTGAGTGATATACATATGCCCTTGCTCAAGGTTGGTGCTTTGTTTTTGGAGTCTGAGGCTATCCCTCCTATTACACGTATGGCACTCACACGTGATACTTGGATAACTGTATTATGCAGAAAATTGAGAGATTGGTGGCATTGGGTTGCAAATGGGGAACTTCCTATTGTTGCTTCACATGGGGTGGAAGTTGAAGTATACAAGTCTCTTGATCCGGGGGTTCGTGTGGTCATCTTAAAGGCATTATGTGACATTCGTGTTGAGGATGAGGTCACTGCTCAATGTGAGCTTGAATCTTCTTGGAAGATTGCAGGCTTATTTGGTCCTGCCTTTGACCTCTGCTGGGGAGGCGATGGGTATGAAGGTGACCCAATTATTGGTCATAGATTGTATCGAGAAGTAAGGAAAACTGAAGTAATTCAAATGAAGAAAGGGAAACCGAAAGGTTCGCGGGTCAATTCTAGTACAACATACCAGTGGGAAGCAGTTGCTACTAATTTTGATGAATTTCAAGAAGTCTCCCGCAGTTTCTTGCAGTTGCTAAAATTTGTAGTCTTTAAAAATCTTGATGGacagtttgaagatttctgTGGATGTAGTCCCTGCAGAAAGGTCATAATAGGTTTGACTGACTCAGCAGAGGGCAAAGAAAAAATGGATAAGCTTTCCTCAAGTAAAAACAGAACGGAGGCTTCTCTAGGGAAAAAGCTGAAGATAGACATGCTTCCTGAGATTGAGAAAGTTCACAAGAGAAAAGAGAGGTTGCTGAAAAAGCAACACAGAGAAGCTCTTCTTCTTGATAACTTCTTGGTTGTTGATGGGATTGGTCCTGGGCGTTCACTTCGTGATAGGAAACCTGTTACCTACACATTTGGTAAGAGCAAAAAAGCTTAA 1362 0.4567 MSQGSPPLVSTEPSSDRSSPEPNSQNHVPTSKEETAVPATTRSNRPSRACTIRAASRLYGSGQPAAIERGSKASKKEQRRREESPEEEEVQQQCSKIVTPLVEPPSPSQLPRWNLRSMWELASILNFLHVFRPLLNISVEFSAEEFETALLTPNDTLSDIHMPLLKVGALFLESEAIPPITRMALTRDTWITVLCRKLRDWWHWVANGELPIVASHGVEVEVYKSLDPGVRVVILKALCDIRVEDEVTAQCELESSWKIAGLFGPAFDLCWGGDGYEGDPIIGHRLYREVRKTEVIQMKKGKPKGSRVNSSTTYQWEAVATNFDEFQEVSRSFLQLLKFVVFKNLDGQFEDFCGCSPCRKVIIGLTDSAEGKEKMDKLSSSKNRTEASLGKKLKIDMLPEIEKVHKRKERLLKKQHREALLLDNFLVVDGIGPGRSLRDRKPVTYTFGKSKKA 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1490 453 Pfam DDT domain 123 166 IPR018501 -
Sto3g1490 453 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 19 448 - -
Sto3g1490 453 MobiDBLite consensus disorder prediction 70 90 - -
Sto3g1490 453 MobiDBLite consensus disorder prediction 1 95 - -
Sto3g1490 453 MobiDBLite consensus disorder prediction 1 50 - -
Sto3g1490 453 PANTHER REMODELING AND SPACING FACTOR 1 19 448 IPR028938 GO:0006355|GO:0031213
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1490 Sto-Chr3 10977668 10981922 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Sto3g1490 DDT 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1490 - - gmx:100795519 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1490 3 10977668 10981922 Sto12g0851 12 5336333 5343503 CCT
Sto3g1490 3 10977668 10981922 Sto3g1490 3 10977668 10981922 ECH