Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1472 ATGGCTTCTTCTTCCGCGCTTCGAGATCCTTCCAGGCACTACACCTATAATCGGAAGCAGAAATCTCTCGGCCTCTTGTGCACCAAtttcttgggcttgtaTAATCGAGACGGTGTTCACTTGATCGGGCTTGACGATGCGGCTGCGAGATTAGGGGTCGAGAGGCGGCGGATCTATGATATAGTTAATGTTTTGGAGAGTGTCGGGGTACTTGCAAGAAAAGCGAAGAATCAATATACTTGGAAAGGATTTGGGGCGATTCCGGGGGCTTTACAGGAGCTCAAGGAAGAGGGCTTGAGGGAGAATTCCGATGCTTTTGATGGTGGTCACGACAACGCAAAAGTATCAGATGATGAGGATGACGAAGATACATTATCCAATCCAAGTACTGGAAGTCAGAATGACAAGTCTAATCCTAATTCTACGCTTCCCAAATCTATGAAAAATGATAACCGAAGGGAAAAATCTCTGGCACTTCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATATGGAATTGATTTCCCTCGATGAAGCCGCTAGATTGTTGCTTGGAGACGCCCATAATACGTCAATAATGAGAACCAAAGTCAGACGTCTATATGATATTGCAAACGTGCTGTCCTCCATGAATCTAATTGAGAAGACCCATACATCAGACACAAGAAAACCGGCTTTCAGGTGGCTGGGTTTGAAGGGGAAAACAGAGAACGAGTCTACAAATCCCAATGAATCTAGGAAAAGGATATTTGGTAGTGATATCACCAACATCAGTTTTAAGAGGAACAAAGTGGATTTATTCTCGAATGGGGACTTCAACCAGAATCCTAAGATGCAAAATGAAGTGGACAGCGATAGTTGGCTCGGTCAGGAAGATAAAAGCAATTTGAAACAGGACATAAAGCAGAGTTCAAAGAGCTACCAGTTTGGTCCTTTTGCTCCATCCTTCGTCCCCAAAGTGAATGCCTCTGAGAATAGTGATGCAAAGCCGGTCCATGACTGGGATAGTCTCGCGACTGCCTATCGTCCTCAGTATCAAAACCAAGCTTTGAGAGAACTCTTCAGCCATTACATGGAAGCATGGAAATCATGGTACTCAGAAGTTGCTGGCAAGAGGCCAATTCacattttgtaa 1140 0.4342 MASSSALRDPSRHYTYNRKQKSLGLLCTNFLGLYNRDGVHLIGLDDAAARLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFGAIPGALQELKEEGLRENSDAFDGGHDNAKVSDDEDDEDTLSNPSTGSQNDKSNPNSTLPKSMKNDNRREKSLALLTQNFVKLFVCSNMELISLDEAARLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGLKGKTENESTNPNESRKRIFGSDITNISFKRNKVDLFSNGDFNQNPKMQNEVDSDSWLGQEDKSNLKQDIKQSSKSYQFGPFAPSFVPKVNASENSDAKPVHDWDSLATAYRPQYQNQALRELFSHYMEAWKSWYSEVAGKRPIHIL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1472 379 Gene3D - 147 234 IPR036388 -
Sto3g1472 379 Gene3D - 13 86 IPR036388 -
Sto3g1472 379 MobiDBLite consensus disorder prediction 102 151 - -
Sto3g1472 379 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Sto3g1472 379 PANTHER TRANSCRIPTION FACTOR E2F 1 370 IPR015633 GO:0000978|GO:0006357
Sto3g1472 379 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Sto3g1472 379 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Sto3g1472 379 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 1 370 - -
Sto3g1472 379 MobiDBLite consensus disorder prediction 126 146 - -
Sto3g1472 379 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Sto3g1472 379 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Sto3g1472 379 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1472 Sto-Chr3 10802205 10806192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1472 13 376 E2F-DP Transcription Factor Family AT3G48160 58.177 7.27e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sto3g1472 E2F_TDP 1.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1472 K09391 - gmx:100795252 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1472 3 10802205 10806192 Sto3g1472 3 10802205 10806192 ECH