Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1470 ATGGCGATCCCCATTCCCAATCGCCATCTCTTCATAGACGGCGAGTGGAAACAACCTATTCTCAAGAAACGAATTCCTATTATCAATCCCTCCACCGAACACAAAAtcgGTGATATTCCGGCTGCTACTGCGGAAGATGTGGAACTCGCAGTGGCTGCTGCCCGGAGAGCCCTGCTCCGGAACAAGGGCAAAGATTGGTCATCTGCTTCTGGGTTTCTTCGTGCTCGGTATTTGCGAGCTATCGCTGCTAAGGTAACAGAGAGAAAGTCTGAACTAGCAAAGCTTGAATCGATGGATTGTGGAAAACCACTGGATGAAGCTTCATGGGACATGGACGATGTTGCTGGGTGCTTTGAGTACTATGCTGACCTTGCTGAAGGATTGGATGCAAAGCAAAAGGCTCCCATATCTCTTCCCATGGACACCTTCAAAAGTCATGTTCTTAAGGAGCCCATTGGAGTTGTTGCATTAATTACTCCATGGAATTATCCTCTATTAATGGCTGTGTGGAAAGTTGCTCCTGCTTTGGCTGCTGGTTGTACTGCAATATTGAAGCCATCTGAATTGGCATCTGTGACCTGTTTGGAGCTGGGTCAAATATGTAGAGAAGTGGGCCTTCCTCCAGGTGTCTTCAATATTCTCACTGGATTAGGCCCTGAAGCTGGTGCTCCTTTGGCATCACATCCTCATGTTGACAAGGTTGCCTTTACTGGAAGCTCCATGACTGGGAGCAAGATTATGACAGCTGCAGCCCAAGTGGTCAAGCCTGTTTCATTAGAGCTTGGAGGGAAAAGCCCAATTGTTGTATTTGAGGATGTTGACCTTGATAAAGCTGCTGAATGGACCGCCTTTGGCTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACATCCCGTCTTATTTTACATGAAAGCATAGCCGGAGAATTTCTGAATAGGCTTGTGAAATGGATAAAAAACATCAAAATATCAGATCCCTTGGAAGAAGGTTGCAGGCTAGGTCCAGTTGTTAGTGCAGGACAGTATGAAAAAATACTGAAGTTCATCTCAATTGCTAAGAGTGAGGGTGCAACTATTTTGACTGGTGGATCTCGCCCCAAGCATTTGGAGAGGGGGTTCTTTGTTGAACCGACGGTCATAACTGACATAACTACCTCTATGCAAATTTGGAGAGAAGAAGTTTTCGGACCTGTTCTCTGTGTAAAAACATTTAGAACTGAGGAAGAAGCTATTGAGCTAGCAAATGACAGCAAATATGGCTTAGCGGCTGCTGTAATATCAAATGATCTAGAAAGATGTGATCGCATGACTAAGGCTTTTCAGGCAGGAATTGTATGGGTCAATTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCACTAAACGCAGTGGTTTTGGTCGTGAATTAGGAGAATGGGGGCTTGATAACTACTTGAGTGTGAAGCAAGTGACTCAATATATATCTGATGAACCGTGGGGCTGGTACCAGTTTCCTTCAAAGCTGTGA 1512 0.4544 MAIPIPNRHLFIDGEWKQPILKKRIPIINPSTEHKIGDIPAATAEDVELAVAAARRALLRNKGKDWSSASGFLRARYLRAIAAKVTERKSELAKLESMDCGKPLDEASWDMDDVAGCFEYYADLAEGLDAKQKAPISLPMDTFKSHVLKEPIGVVALITPWNYPLLMAVWKVAPALAAGCTAILKPSELASVTCLELGQICREVGLPPGVFNILTGLGPEAGAPLASHPHVDKVAFTGSSMTGSKIMTAAAQVVKPVSLELGGKSPIVVFEDVDLDKAAEWTAFGCFWTNGQICSATSRLILHESIAGEFLNRLVKWIKNIKISDPLEEGCRLGPVVSAGQYEKILKFISIAKSEGATILTGGSRPKHLERGFFVEPTVITDITTSMQIWREEVFGPVLCVKTFRTEEEAIELANDSKYGLAAAVISNDLERCDRMTKAFQAGIVWVNCSQPCFTQAPWGGTKRSGFGRELGEWGLDNYLSVKQVTQYISDEPWGWYQFPSKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1470 503 Pfam Aldehyde dehydrogenase family 23 485 IPR015590 GO:0016491
Sto3g1470 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Sto3g1470 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Sto3g1470 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 500 - -
Sto3g1470 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Sto3g1470 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 500 - -
Sto3g1470 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Sto3g1470 503 SUPERFAMILY ALDH-like 5 490 IPR016161 GO:0016491
Sto3g1470 503 CDD ALDH_F10_BADH 27 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1470 Sto-Chr3 10785546 10791866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1470 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.437 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1470 K00130 - qsu:112020174 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1470 3 10785546 10791866 Sto12g0829 12 5212755 5217468 CCT
Sto3g1470 3 10785546 10791866 Sto3g1470 3 10785546 10791866 ECH