Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1468 atggaaATGGAATTTCACCGATCCTACAGtacctcttcctcttcttcttcctcccacCATAACAATAAACAACTGTACTCTCTCTCTTCCCAACGCAGCCTCGCCTCCATCCCTTCCCTCAACCACCACCAGTCCTCCTCCGCCACCTACCACCACTGTCTCGCCACTCTTAAGGGTCACACCTCCTCCTACATCTCCTCCCTCACCCTTGCCGGAAAATTCCTCTACACTGGCTCCTCCAACCGCGAAATCCGATCCTGGAACCACACCACCGCCGCCTCTTCCGCCGCCGGAGCATCCGCCGTCACGGCAGGTAAAGGCGCCGTCAAGTCTCTCGTCGTTCAATCCGACAAGCTCTTCAGCGCGCACCAGGACTACAAAATCCGAGTCTGGAAGATAACCACCAACGTCAATGACGGCGAAGACGAGGACGACGCGTGGGGGGCCGAGGTGAAGTACACGCGCGTGGCCACGCTGCCCACGCTGGGCGACCGGGCCTGCAAGGTCCTGAACCCGAAGAACCACGTCCAGATCCGGCGGCACAAGAAGTGCACGTGGGTGCACCACGTGGACACCGTCTCGGCCCTGGCCCTCTCGCGTGACCACGCGCTCCTCTACTCCGTGTCGTGGGACCGGAGCATCAAGATCTGGCGGACCACGGACTTCACGTGCGTGGAATCCGTCAACAACGCGCACGACGACGCCATCAACGCCGTCGCGGTGTCACGCGACGGCCACGTGTACACGGGATCGGCGGATAAGAAGATCAAGATATGGAGAAACAACCAGAATCGGAACGAGAATGAGAAGAAGGGTATAAGGCATTGCTTGGTGGGCACGCTGGAGAAGCACAAGTCGGGGATTAACGCGCTGGCGTTGAGCGTGGACGGGAGCGTGTTGTATTCGGGCGCGTGCGATAGGTCGATATTGGTGTGGGAGAAGAGGCGTGAAGGTGAAGGCGAAGGTGAAGGGataatggtggtggtgggtgcgCTTAGGGGTCACACGAAGTCGATATTGTGCTTAGCCGTGGTGGGGGATTTGGTGTGTAGTGGCTCGGCGGATAAGAGCATAAGGGTGTGGAGAGGGGTtcgtggcggcggcggcggcggtggggAGTACGAGTGTTTGGCGGTTTTGGAAGGGCATATGGGTCCGGTCAAGTGTTTGGCGGCGGTGGAGGATAAGGGGAATGATTCCGCGTCGGAGGCGTGTTTTCTGGTGTATAGTGGCGGTTTGGACTGTGACGTTAAGCTAATTAAGATTAATGTTAGAGAACTTATTTAG 1287 0.54 MEMEFHRSYSTSSSSSSSHHNNKQLYSLSSQRSLASIPSLNHHQSSSATYHHCLATLKGHTSSYISSLTLAGKFLYTGSSNREIRSWNHTTAASSAAGASAVTAGKGAVKSLVVQSDKLFSAHQDYKIRVWKITTNVNDGEDEDDAWGAEVKYTRVATLPTLGDRACKVLNPKNHVQIRRHKKCTWVHHVDTVSALALSRDHALLYSVSWDRSIKIWRTTDFTCVESVNNAHDDAINAVAVSRDGHVYTGSADKKIKIWRNNQNRNENEKKGIRHCLVGTLEKHKSGINALALSVDGSVLYSGACDRSILVWEKRREGEGEGEGIMVVVGALRGHTKSILCLAVVGDLVCSGSADKSIRVWRGVRGGGGGGGEYECLAVLEGHMGPVKCLAAVEDKGNDSASEACFLVYSGGLDCDVKLIKINVRELI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1468 428 Gene3D - 268 427 IPR015943 GO:0005515
Sto3g1468 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 361 IPR001680 GO:0005515
Sto3g1468 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 269 IPR001680 GO:0005515
Sto3g1468 428 Gene3D - 3 156 IPR015943 GO:0005515
Sto3g1468 428 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 424 IPR045182 -
Sto3g1468 428 MobiDBLite consensus disorder prediction 1 23 - -
Sto3g1468 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 259 - -
Sto3g1468 428 SUPERFAMILY WD40 repeat-like 52 423 IPR036322 GO:0005515
Sto3g1468 428 SMART WD40_4 373 421 IPR001680 GO:0005515
Sto3g1468 428 SMART WD40_4 179 218 IPR001680 GO:0005515
Sto3g1468 428 SMART WD40_4 95 132 IPR001680 GO:0005515
Sto3g1468 428 SMART WD40_4 274 313 IPR001680 GO:0005515
Sto3g1468 428 SMART WD40_4 325 362 IPR001680 GO:0005515
Sto3g1468 428 SMART WD40_4 50 88 IPR001680 GO:0005515
Sto3g1468 428 SMART WD40_4 221 260 IPR001680 GO:0005515
Sto3g1468 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 361 - -
Sto3g1468 428 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 11 424 - -
Sto3g1468 428 Gene3D - 157 267 IPR015943 GO:0005515
Sto3g1468 428 Pfam WD domain, G-beta repeat 278 312 IPR001680 GO:0005515
Sto3g1468 428 Pfam WD domain, G-beta repeat 375 419 IPR001680 GO:0005515
Sto3g1468 428 Pfam WD domain, G-beta repeat 330 361 IPR001680 GO:0005515
Sto3g1468 428 Pfam WD domain, G-beta repeat 53 88 IPR001680 GO:0005515
Sto3g1468 428 Pfam WD domain, G-beta repeat 187 217 IPR001680 GO:0005515
Sto3g1468 428 Pfam WD domain, G-beta repeat 230 259 IPR001680 GO:0005515
Sto3g1468 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 313 IPR001680 GO:0005515
Sto3g1468 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 313 - -
Sto3g1468 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1468 Sto-Chr3 10755328 10757674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1468 284 390 U-box Gene Family AT2G33340 28.440 3.66e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1468 - - gmx:100815608 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1468 3 10755328 10757674 Sto12g0827 12 5203381 5204565 CCT
Sto3g1468 3 10755328 10757674 Sto12g0827 12 5203381 5204565 ECH
Sto3g1468 3 10755328 10757674 Sto3g1468 3 10755328 10757674 ECH