Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1440 ATGCCCAGCATCATTTCTTTGCAAAAAGGTGATAGCTTCAAGTACTACCACTACTACACATCCTCCCCTGAATCGCCTTTCTCTTCCTTCCAATCTCCTTATGATGAGaaatcctcctcctcctcatctaTAAGCAGAATCAGCCCTCTGATTCTACTGGTTATAATAGTTCTAgcactcatcttcttcctctacGGAATCGTCCATTTGGTTCTCTGGTTTCTCATGAAAAccccatcatcaccatcatcatcttcttcacctCTCTACCAATCATCCAATAGATTCCCACCAGAATCCACGCGCTCGCGTGGTCTTCAGAGGCAGCTCCACCATCTCTTCCGCTTACACGATTCAGGATTAGAGCAATCCCTCATAGATGCTCTTCCTGTGTTCTACTACGAGGATGTTGTCGTTTTGGGTTCCAAACAACCATTTGACTGTGCAGTGTGTCTCTGTGAATTCTCGGAACAGGACAAGCTGAGGTTGTTGCCTATGTGCAGCCACGCTTTCCACATCAATTGCATAGACACGTGGCTTCTCTCAAACTCCACGTGTCCTCTCTGTAGAGCCACAATCTCAATCTCTTCATCTTCAAGCTCTGGCCTTTCCATGGAGAATCCCTTATACAgattcagaggaggaggaggaggagaaagagATGAAGAGAATAATGTTGGGTGTTCAGATGGGGAGGATCAAAATGGTGAAAAGAGGGTTTTTTCAGTGAGACTTGGAAAGTTTAGAAATGTCAATGGAGGAGGAGGAATGGAGGAGGATGATGGTGAAGAAGAGGGTAATAATACTAATACTACTAGTAGTAGTAGGGATATGAATGGAAGGAGATGCTACTCCATGGGTTCATACCAGTATGTGGTGAGTGGTTCAGATGTGAAAGTGATTTGGCTTTGGTCTAATAAGACCAACTTTCATTATTCTTCTAATAATACTGCTTTCCCTTAA 963 0.3863 MPSIISLQKGDSFKYYHYYTSSPESPFSSFQSPYDEKSSSSSSISRISPLILLVIIVLALIFFLYGIVHLVLWFLMKTPSSPSSSSSPLYQSSNRFPPESTRSRGLQRQLHHLFRLHDSGLEQSLIDALPVFYYEDVVVLGSKQPFDCAVCLCEFSEQDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRATISISSSSSSGLSMENPLYRFRGGGGGERDEENNVGCSDGEDQNGEKRVFSVRLGKFRNVNGGGGMEEDDGEEEGNNTNTTSSSRDMNGRRCYSMGSYQYVVSGSDVKVIWLWSNKTNFHYSSNNTAFP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1440 320 SUPERFAMILY RING/U-box 125 196 - -
Sto3g1440 320 MobiDBLite consensus disorder prediction 82 103 - -
Sto3g1440 320 MobiDBLite consensus disorder prediction 212 235 - -
Sto3g1440 320 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 20 300 - -
Sto3g1440 320 SMART ring_2 148 189 IPR001841 -
Sto3g1440 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 20 300 - -
Sto3g1440 320 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Sto3g1440 320 CDD RING-H2_PA-TM-RING 147 190 - -
Sto3g1440 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 195 IPR013083 -
Sto3g1440 320 Pfam Ring finger domain 147 190 IPR001841 -
Sto3g1440 320 MobiDBLite consensus disorder prediction 215 235 - -
Sto3g1440 320 MobiDBLite consensus disorder prediction 249 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1440 Sto-Chr3 10558823 10559890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1440 66 293 C3H Transcription Factor Family AT2G18650 40.711 1.67e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1440 - - aprc:113846147 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1440 3 10558823 10559890 Sto3g1440 3 10558823 10559890 ECH