Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1437 ATGGTGGCCACATCGTGCATGAATTTGTTGGACTTGTCGGGGGATATTTTGAATTTCCCTCAAACTCCCAGAGCTCTTCCGCGGGTTATGACTGTTCCGGGAGTTATATCTGATATAGATGGAAAACAAAGCACTGGTGATCATGATTCACAAGTTTTCTCATCGGAACACCGTCAGAGGATAATTATTGTAGCAAATTTTCTTCCTCTCAATGCTCAAAAGGATGAAATTTCAGGCAGATGGTCCTTTAATTATGATGAAGATTCAATTTTGTTACAGCTGAAGGACGGTATTTCTTCTGATACTGATGATACTGATGTTTTTTATGTGGGATCTCTGAAAGTTGATGTTGAAGAAAGTGAACAAGAGAAAGTTTCTCTTGAGTTGCAGGAGAAATTCAAATGCGTGCCTACCTTCCTTCCTTCAGATCTCCAGGAACAGTTTTATCATGGATTCTGCAAGCAATATCTGTGGCCTCTTTTCCATTACATGTTACCCATGTTTCCCGAATATTCCAATCGCTTTGATAGATCACTCTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTTATGGAGAATATTAATTCGGAAGATGATTATGTATGGGTTCATGATTACCATCTCATGGTTCTCCCAACACTTCTTCGAAAGAAGATCATTCGGGTCAAGCTAGGATTTTTCCTCCACAGTCCTTTTCCTTCATCAGAAATTTTCCGAACTCTGCCTGTCAGAGATGAAATTTTGAAAGCATTGCTTAATGCAGATTTAATTGGGTTTCATACGTTTGATTATGCTCGCCATTTTCTGTCTTGCTGCAGTCGGATGCTTGGCGTGGGATATGAATCCAAAAGGGGCTACATTGGGCTTGAATACTTTGGCCGCACAATATACATCAAAATATTGCCTGTAGGAATTCATATGGGTCGACTTCAATCAGCCTTAAATCACCCATCATCTCCTGCCAAAGCCAGAGAAATCTATGATCGGTTTAAAGGGAAAACGCTTATTCTTGGTGTTGATGATATGGACATATTCAAAGGCATCAGTCTTAAACTCTTGGCTGTAGAAAAACTCTTACAGTGTAATCCAGAAATGCAAGGTGAATTATCACTGGTCCAAATTGTAAATCCCCCAAGGAGTTCCGGCAAAAATGTTGAGGAGGCGAAGAAGGAGATACACATTATTGCCAAAAGGATAAACGAAAGGTTCAGTTTGCCTAATTATGAACCTGTGACCATCATAGATCATCCTCTGCCTTTTTATGAGAAGACAGCCTATTATGCTTTGGCAGAATGTTGCATTGTGAGTGCAGTTCGGGACGGTATGAATTTAATTCCATACAAATATATTGTCTGTAGGCAAGGGAATGCAAAATTGGATGAAGCCTTAGGAATTGCATTTGAGTCCCCTCGTACAAGTGCGCTTGTTGTTTCTGAGTTTATAGGTTGCTCGCCATCTCTTAGCGGGGCATTGAGGGTGAACCCATGGGACATTAATGCTGTAGCTGATGCAATAGATTTAGCTATCACAATGAACATCGAAGATAAACGATTGCGGCACAAGAAGCACTATCGATATGTTAAGTCTCACGATGTGGCTTACTGGGCCCGTAGTTTCCAGCAAGATCTAGTGCGTGCATGCCAGGATCACTACAGCAAACGTTGCTGGGGTATCGGCTTAGGATTGAGTTTCAGAATCTTGGCCCTCtctcctaattttaggaagctGTCCATTGACTACATTGTCTCTGTCTACAAAAGGTCAAGTCAGAGGGCAATTTTTTTGGACTATGATGGTACAATTGTGCCTGAATCTTCCATTGTTAAAAGCCCCAGTGCTGAAGTCATATCTGTTCTAAATAACCTTTGCAATGACCCGGACAACACTGTGTTTATAGTTAGTGGCAGGGGAAAGACCTCACTGAGTGAGTGGTTCGATCAGTGTGAGAATCTCGGTATAGCAGCTGAGCATGGTTATTTTAAAAGGTGGAGTAAGCAGTCAAGTTGGGAAACAAATCATATAGCTACAGATTTTGCTTGGAAAAGGATTTCTGAACCTGTGATGAGATTATACACTGAGGCGACTGATGGCTCTTATATAGAGACCAAGGAGAGTGCCTTGGTATGGCACTATCGTGACGCCGACCCCGATTTCGGATCTTGGCAGGCCAAGGAGCTGCTGGATCACCTTGAAAGTGTCCTTGCAAGTGAGCCAGTAGTTGTTAAGAAGGGACAGCATATTGTAGAAGTTAAGCCACAAGGGATAACAAAAGGGTTAGTTGCAGAGGAGGTTCTATCTACGCTGATGCAAAATGGGAACTCGCCGGATTTCGTACTGTGCATTGGGGACGATAGGTCTGACGAAGACATGTTCGAGAGCATATCGAACAAAGTGTACGGAGCAGCCACTAGTTTGGCACCAGAAATCTTTGCTTGCACTGTTGGTCAAAAGCCAAGCAAAGCCAGGTACTACCTAGATGATACTGTGGACGTGATGAAGTTACTTGAAGGCCTTGGTACTGCTTCAAGGACTATATCAAGACGTTCTGAACTAGTCccttttgaaagaaaagaagcctgttttgaaaactttgctTGA 2610 0.4138 MVATSCMNLLDLSGDILNFPQTPRALPRVMTVPGVISDIDGKQSTGDHDSQVFSSEHRQRIIIVANFLPLNAQKDEISGRWSFNYDEDSILLQLKDGISSDTDDTDVFYVGSLKVDVEESEQEKVSLELQEKFKCVPTFLPSDLQEQFYHGFCKQYLWPLFHYMLPMFPEYSNRFDRSLWQAYVSANKIFADKVMENINSEDDYVWVHDYHLMVLPTLLRKKIIRVKLGFFLHSPFPSSEIFRTLPVRDEILKALLNADLIGFHTFDYARHFLSCCSRMLGVGYESKRGYIGLEYFGRTIYIKILPVGIHMGRLQSALNHPSSPAKAREIYDRFKGKTLILGVDDMDIFKGISLKLLAVEKLLQCNPEMQGELSLVQIVNPPRSSGKNVEEAKKEIHIIAKRINERFSLPNYEPVTIIDHPLPFYEKTAYYALAECCIVSAVRDGMNLIPYKYIVCRQGNAKLDEALGIAFESPRTSALVVSEFIGCSPSLSGALRVNPWDINAVADAIDLAITMNIEDKRLRHKKHYRYVKSHDVAYWARSFQQDLVRACQDHYSKRCWGIGLGLSFRILALSPNFRKLSIDYIVSVYKRSSQRAIFLDYDGTIVPESSIVKSPSAEVISVLNNLCNDPDNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFKRWSKQSSWETNHIATDFAWKRISEPVMRLYTEATDGSYIETKESALVWHYRDADPDFGSWQAKELLDHLESVLASEPVVVKKGQHIVEVKPQGITKGLVAEEVLSTLMQNGNSPDFVLCIGDDRSDEDMFESISNKVYGAATSLAPEIFACTVGQKPSKARYYLDDTVDVMKLLEGLGTASRTISRRSELVPFERKEACFENFA 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1437 869 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 852 IPR001830 GO:0003824|GO:0005992
Sto3g1437 869 Coils Coil 110 130 - -
Sto3g1437 869 SUPERFAMILY HAD-like 595 843 IPR036412 -
Sto3g1437 869 Pfam Trehalose-phosphatase 598 831 IPR003337 GO:0003824|GO:0005992
Sto3g1437 869 CDD HAD_TPP 596 837 - -
Sto3g1437 869 CDD GT20_TPS 60 547 IPR001830 GO:0003824|GO:0005992
Sto3g1437 869 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 852 - -
Sto3g1437 869 Gene3D - 594 711 IPR023214 -
Sto3g1437 869 Gene3D - 712 854 IPR023214 -
Sto3g1437 869 Gene3D Glycogen Phosphorylase B; 49 320 - -
Sto3g1437 869 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 596 797 IPR006379 -
Sto3g1437 869 TIGRFAM T6PP: trehalose-phosphatase 593 842 IPR003337 GO:0003824|GO:0005992
Sto3g1437 869 Gene3D Glycogen Phosphorylase B; 321 533 - -
Sto3g1437 869 Pfam Glycosyltransferase family 20 60 547 IPR001830 GO:0003824|GO:0005992
Sto3g1437 869 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1437 Sto-Chr3 10531854 10534700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1437 1 848 Trehalose Biosynthesis Gene Families AT1G23870 68.316 0.0 1239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1437 K16055 - gmx:100812031 1346.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1437 3 10531854 10534700 Sto12g0812 12 5104568 5114154 CCT
Sto3g1437 3 10531854 10534700 Sto12g0812 12 5104568 5114154 ECH
Sto3g1437 3 10531854 10534700 Sto3g1437 3 10531854 10534700 ECH