Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1434 ATGACTCATAACAAATCcaatcatcaccatcatcttcaTCGTCGAATTCTCTCATTCCCAGCAGTATTCCCGTGCGAAGCCGTCTCTCCCACTACCCTCTTAACCTCTCTGATTTCCCTCTCTCGCGCTATCTGCAGCTTCCAATCTTCCTTCTTCCCCACCCAACGACGGAATGCCAGAGAGGCCATACGCCAAATCACCATCCTCCTCATCTTCCTCGACGAGATTCAACACCGGGGCTTCCCGATTCCCCCGCAACCCTTCCTCCTCTGCTTCTCCGAGTTCCACttgagcttccagaagctcctcttcctcctccaagACCTCACTCGCCGCGGCGCCACCCTCTGGATGCTCACGAAGTCCCACCACGTCGCCTCGCAGTTCCGCGTCGTGATTCGCGGCCTCGCCACCGCGCTTGACGTCTTGCCCCTGCGTCGGATTGATGAGGAGGACGACGTCGTTTGTGGGGAAGTCAAGGAGTTGGTGGGGTTGGTGGCGGAACAAGCTCGCAGGGTGAAGTTTGAGGTCGACCCGGATGATGAGGAGGCTGCGAACCGGGTTCGATCGGTTTTGAGTCAGCTCGAGAGGGGGGTCGAACCGGATGTCGTTGAACTGAAGCGGATCCTTGATTATCTTGGAGTGAAGAGCTGGAGTGATTGTAATGAAGAGATTGAGTTCTTGGAAGAGGAAGTGGGTTTCCAGTGTTCTGAATGTGACGAGCGAGAGGTTCCTTTTCTGAGTGGTTTGATCGGATTGTTAAGCTACTGCAGGGGAGTGATGTTCGAGACTCTGGATTTTCGTGATGAGGGGAAGAGGTGTAATAATAATACAGAGACGATGATGAATTGCATAAACCCAGAGGATTTTCGATGCCCGATTTCTCTCGAGCTAATGACGGACCCCGTGACTATATCCACAGGTCAGACATACGACCGAGCTTCGATTCAGAAATGGCTGAAATCTGGAAACAGAGTGTGCCCCAAAACAGGGGAGAAGCTCACCAACACAGAGTTAGTCCCAAACACGACGCTCCGGAGGCTGATCCAACAATTCTGCGCCGACAATGGCGTTTCCCTCGTCAAATCTCAAAGCCCAAGTCGAGACATAGCGAAAACCGCCGTCGCGGGAAGCCCAGCAGCCGCTCACGCCATTCAATTCCTCTCCTGGTTTCTTGCCCGGAGGCTCGTCTTCGGGACGAATGAGCAGAGGAATAAAGCGGCTTACGAGGTCCGTTTGCTCGCAAGATCCAATCTTTTCAACCGGTCGTGTTTGGTCCAAGTGGGAGCAGTGTCCCCTCTGGTGAACCTTCTAGAAACCGACGAGAGATCCACGCAGGAGAACGCCATTGCCGCTCTGTTGAAGCTTTCCAAGCATAACAGAGGAAAAGAAGCCATAATGGAAAACAGAGGAATAGCACCGATTCTAAAAGTTCTCAAAAACGGAAAAAGCTCAGAGTCGCGCCAAATCGCAGCCGCGATAATCTTCTACCTCTCTTCGGTGAAACAATACaggaaaacaataggagaaaacCCAGAAACAATCCCTTCATTAGTACAACTCATCAAGGAAGGAACAACCTGCGGGAAGAAGAACGCCATAGTAGCGATCTTCGGGCTTCTCCTACACCCCACGAATCATCAGAGAGTACTCGAAGCCAATGTGGTGCCAGAGTTGGTCAAGATTCTATCTTCCTCGGAAAGGGAAGATCTCGTGACGGATTCTTTAGCCGTTCTTGCGGCTTTGGCGGAGAAGAGTAAAGGAGCAGAGGCAATTCTAAAGGCCTCGGCTTTGGGTTTGATCTCGAGGCTTTTGCAGTGTACGACAAGACACGAAGGGAGAGAACACTGCGTTTCGATTCTCCTGTCGTTGTGCGTGAATGGAGGGGAAGAGGTGGTGGGTGCTTTGGCGAAGGAGGGTTCAGTGATGCCATCGCTGTATTCGATTCTGGCGGAAGAGAAATGCCATGCGGGACTTATCTCCTACTTGGCAATCTTTATCTCACCCATCTCAATATTTGTGAATATAAGGCATAAAAAATCAGTGAGAAAATTCAGACCAGACCCATATCTAGCAGCTATATTCAACTGTGAGATTTGGATTTTGTATTGCATTTTACTTCCATCCTCCCAACCATACCATTATGCTATGTTTCTGCCTGATTCTTTTGGCCTTACATTGGAGCTCATCTACATTGCCATCTTCTATGCATATGCTCCCAAGGACAAAAGAAAACAGATAGCAATAACTCTTGTGGTTGAAGTTGTTCTTGTTGCCATCATAGCTTTCATAATCTTTCTGTTTATATCGTTCCACCATCGCCTATGGTGGGTCCGGGTAATTCAGTCAAGAAGCATAAAGTACATGCCATTCTTCCTTTCACTGTTTATATTCATCAACGGTCTAGTTCCTCTGCTTTCTGCACTAATCAGTCATCATTTTCATGAATATGGTGATTCAAGTTTAGTGAGCATCTTGCAGACTCTTTTGGGGTTGGGGCAGCTCATTCTCTATGCATGCTACTTCAGGAACACCAAAGGGAATGATGATGATCAGAGCTTATGA 2565 0.478 MTHNKSNHHHHLHRRILSFPAVFPCEAVSPTTLLTSLISLSRAICSFQSSFFPTQRRNAREAIRQITILLIFLDEIQHRGFPIPPQPFLLCFSEFHLSFQKLLFLLQDLTRRGATLWMLTKSHHVASQFRVVIRGLATALDVLPLRRIDEEDDVVCGEVKELVGLVAEQARRVKFEVDPDDEEAANRVRSVLSQLERGVEPDVVELKRILDYLGVKSWSDCNEEIEFLEEEVGFQCSECDEREVPFLSGLIGLLSYCRGVMFETLDFRDEGKRCNNNTETMMNCINPEDFRCPISLELMTDPVTISTGQTYDRASIQKWLKSGNRVCPKTGEKLTNTELVPNTTLRRLIQQFCADNGVSLVKSQSPSRDIAKTAVAGSPAAAHAIQFLSWFLARRLVFGTNEQRNKAAYEVRLLARSNLFNRSCLVQVGAVSPLVNLLETDERSTQENAIAALLKLSKHNRGKEAIMENRGIAPILKVLKNGKSSESRQIAAAIIFYLSSVKQYRKTIGENPETIPSLVQLIKEGTTCGKKNAIVAIFGLLLHPTNHQRVLEANVVPELVKILSSSEREDLVTDSLAVLAALAEKSKGAEAILKASALGLISRLLQCTTRHEGREHCVSILLSLCVNGGEEVVGALAKEGSVMPSLYSILAEEKCHAGLISYLAIFISPISIFVNIRHKKSVRKFRPDPYLAAIFNCEIWILYCILLPSSQPYHYAMFLPDSFGLTLELIYIAIFYAYAPKDKRKQIAITLVVEVVLVAIIAFIIFLFISFHHRLWWVRVIQSRSIKYMPFFLSLFIFINGLVPLLSALISHHFHEYGDSSLVSILQTLLGLGQLILYACYFRNTKGNDDDQSL 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1434 854 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Sto3g1434 854 SMART arm_5 543 584 IPR000225 GO:0005515
Sto3g1434 854 SMART arm_5 417 458 IPR000225 GO:0005515
Sto3g1434 854 SMART arm_5 459 500 IPR000225 GO:0005515
Sto3g1434 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Sto3g1434 854 CDD RING-Ubox_PUB 290 332 IPR045210 -
Sto3g1434 854 PANTHER OS07G0532750 PROTEIN 13 657 - -
Sto3g1434 854 SUPERFAMILY ARM repeat 399 653 IPR016024 -
Sto3g1434 854 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Sto3g1434 854 Pfam Sugar efflux transporter for intercellular exchange 658 742 IPR004316 GO:0016021
Sto3g1434 854 SUPERFAMILY RING/U-box 287 360 - -
Sto3g1434 854 ProSiteProfiles Cro/C1-type HTH domain profile. 189 221 IPR001387 -
Sto3g1434 854 Pfam U-box domain 287 356 IPR003613 GO:0004842|GO:0016567
Sto3g1434 854 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Sto3g1434 854 Pfam V-ATPase subunit H 430 606 IPR004908 GO:0000221|GO:0046961|GO:1902600
Sto3g1434 854 Gene3D - 754 852 - -
Sto3g1434 854 PANTHER U BOX DOMAIN-CONTAINING 13 657 - -
Sto3g1434 854 Gene3D - 398 512 IPR011989 -
Sto3g1434 854 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 597 IPR000225 GO:0005515
Sto3g1434 854 Gene3D - 513 660 IPR011989 -
Sto3g1434 854 Gene3D - 661 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1434 Sto-Chr3 10489189 10496780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1434 14 658 U-box Gene Family AT1G60190 41.221 8.48e-158 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1434 - - cit:102613373 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1434 3 10489189 10496780 Sto3g1434 3 10489189 10496780 ECH