Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1431 ATGAAGAAAACAATCAATACTGACCCTTCCACCAAAGTGGATCGCAAAACCATAGAGAGAAACCGCAGAATTCACATGAAAGCCCTCTGTTTCAAGCTCGCTTCCCTTATTCCCCCCCACTACTTAAAGCACACCAagGAGATGATATCGCAGCAAGACCAGCTGGATATGGCGGCGAGCTATATAAGGAATCTGAGGGACAAATTGGAGAAGCTGAaggggaagaaggaggaagcCATGAGATGGAAGGAAACAAAGAGTAATAATGGCCATAATGAGATGCTGCGGGCGGATCAGAACGTGCTGGTCGGATCCAACCTTCCATTGCTGGAGCTCCGAGACTTGGGATCCAGCATCGAGGTCATGCTCATAAGCGGCCTCAACAAGACCTTCATGCTCTACGAACTCATCACCGTCGTCGAGGAAGAAGGAGCCGAAGTCGTTAGCGCCAGTTTCTCCACCGTCGGGGATAAGATCTTCCACACCATCCATGCCCAGGTTAAAATATCAAGAGTGGGAGTGGAGACTTCAAGGGTGTACCAGAGGCTGTACGACTTAATCACGCCATTTCAAAGCTTGGAGTATTTCTAA 591 0.4687 MKKTINTDPSTKVDRKTIERNRRIHMKALCFKLASLIPPHYLKHTKEMISQQDQLDMAASYIRNLRDKLEKLKGKKEEAMRWKETKSNNGHNEMLRADQNVLVGSNLPLLELRDLGSSIEVMLISGLNKTFMLYELITVVEEEGAEVVSASFSTVGDKIFHTIHAQVKISRVGVETSRVYQRLYDLITPFQSLEYF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1431 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 65 IPR011598 GO:0046983
Sto3g1431 196 SMART finulus 16 71 IPR011598 GO:0046983
Sto3g1431 196 Gene3D - 2 97 IPR036638 GO:0046983
Sto3g1431 196 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 187 IPR015660 GO:0003700|GO:0006357
Sto3g1431 196 Coils Coil 55 82 - -
Sto3g1431 196 PANTHER TRANSCRIPTION FACTOR BHLH162 8 187 - -
Sto3g1431 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 77 IPR036638 GO:0046983
Sto3g1431 196 Pfam Helix-loop-helix DNA-binding domain 15 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1431 Sto-Chr3 10467745 10468518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1431 6 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.413 5.07e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g1431 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1431 - - rcu:8289025 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1431 3 10467745 10468518 Sto3g1431 3 10467745 10468518 ECH