Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1414 ATGGCAGAAGATAGTGAAGAAGTTAAGACATTTAAGGATTTGGGCTTATCTGAGTCACTGGTGGAAGCTTGTGAGAAATTGGGTTGGAAAAATCCGTTGAAGATTCAAGCTGAAGCGATTCCCCTTGCTTTGGAAGGGAAAGATGTTATTGGGCTTGCACAAACAGGTTCTGGCAAGACTGGTGCTTTTGCTCTTCCCATATTGCATGCCCTTTTAGAAGCACCACGACCGAAAGATTTTTTTGCTTGTGTTTTATCTCCCACAAGAGAGCTTGCTATTCAAATCTCTGAGCAGTTTGAAGCTTTAGGTGCTGAAATTGGTGTCAAGTGTGCAGTGGTTGGGACACCTGGACGTGTTTTAGATCACCTAAAAAACACTAAGGGTTTTAGTCTTAATAGATTGAAATATTTGGTTATTTTCATTTGTAGTGGAGACTGTGCTGTTTTCATTTTATCTATTACAGTGCTGTATCATTACCTTGTCTTAGATGAGGCTGACAGGCTGTTAAATGAGGACTTTGAGGAATCTCTTAATGAAATATTGCAAGCTATCCCTCAACAGCGAAGAACATTTCTGTTTTCTGCTACGATGACTAAGAAGGTCCAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCATCTAAATACTCTACTGTTGACACACTGAAGCAGCAGTACCGCTTTTTGCCTGCTAAGCATAAGATTTATGGTCTACTGACAAAGTATGTATTGAGTAAAGTAAGAAATCTAGGATTGTGGGCAGAAGATCAAGCTGAACAGAAAGGTGATATTGATGAGGAAAGTTTCTGGAAAAGTAATGTTGCCAAATCAAAGGATTGCTACCTCGTATATATTCTGACTGAAATGGCTGGAAGCACATCAATGGTTTTTACTCGTACATGTGATGCAACACAGCTTCTGGCTTTGACTCTTAGAAATCTTGGTCTGAAAGCCATCCCAATTAACGGTCATATGAGCCAGTCAAAGAGACTTGGAGCTTTGAATAAGTTCAAGTCCGGAGATTGCAATATCCTTATTTGTACTGATGTGGCAAGTAGAGGTCTGGACATTCCGACAGTAGATATGGTTATCAACTATGATATCCCTACAAACTCCAAAGATTATATACATCGAGTAGGAAGAACAGCACGTGCAGGGCGATCCGGGGTTGCCATTTCCCTTGTTAATCAATACGAGCTGGAGTGGTACATTCAGATAGAGAAGCTCATTGGCAAGAAGTTACCAGAGTATCCTGCACAAGAAGAGGAAGTTTTGCTTCTGGAAGAGCGTGTTAGCGAGGCCAAAAGATTATCAGTAATGAAACTgaaggagaatggaggaaaGAGGCGACGAAAGGGAGAAGAAGATTATGAAGAGGaagatattgaaaaatatttaggTCTGAAGGACGGAAAATCATCCAAGACCAAGAAGTTCAAAAGGAAATGA 1464 0.3969 MAEDSEEVKTFKDLGLSESLVEACEKLGWKNPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPRPKDFFACVLSPTRELAIQISEQFEALGAEIGVKCAVVGTPGRVLDHLKNTKGFSLNRLKYLVIFICSGDCAVFILSITVLYHYLVLDEADRLLNEDFEESLNEILQAIPQQRRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKIYGLLTKYVLSKVRNLGLWAEDQAEQKGDIDEESFWKSNVAKSKDCYLVYILTEMAGSTSMVFTRTCDATQLLALTLRNLGLKAIPINGHMSQSKRLGALNKFKSGDCNILICTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLSVMKLKENGGKRRRKGEEDYEEEDIEKYLGLKDGKSSKTKKFKRK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1414 487 Pfam Helicase conserved C-terminal domain 285 391 IPR001650 -
Sto3g1414 487 PANTHER BNAC02G41920D PROTEIN 2 113 - -
Sto3g1414 487 PANTHER BNAC02G41920D PROTEIN 279 476 - -
Sto3g1414 487 PANTHER BNAC02G41920D PROTEIN 112 139 - -
Sto3g1414 487 PANTHER BNAC02G41920D PROTEIN 157 243 - -
Sto3g1414 487 Gene3D - 1 111 IPR027417 -
Sto3g1414 487 Pfam DEAD/DEAH box helicase 158 204 IPR011545 GO:0003676|GO:0005524
Sto3g1414 487 Pfam DEAD/DEAH box helicase 34 110 IPR011545 GO:0003676|GO:0005524
Sto3g1414 487 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 161 169 IPR000629 -
Sto3g1414 487 Gene3D - 265 486 IPR027417 -
Sto3g1414 487 SMART helicmild6 310 391 IPR001650 -
Sto3g1414 487 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 215 IPR014001 -
Sto3g1414 487 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Sto3g1414 487 SMART ultradead3 28 230 IPR014001 -
Sto3g1414 487 Gene3D - 112 226 IPR027417 -
Sto3g1414 487 PANTHER RNA HELICASE 157 243 - -
Sto3g1414 487 PANTHER RNA HELICASE 112 139 - -
Sto3g1414 487 PANTHER RNA HELICASE 2 113 - -
Sto3g1414 487 PANTHER RNA HELICASE 279 476 - -
Sto3g1414 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 412 IPR027417 -
Sto3g1414 487 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 286 430 IPR001650 -
Sto3g1414 487 CDD SF2_C_DEAD 283 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1414 Sto-Chr3 10322006 10329337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1414 6 423 Eukaryotic Initiation Factors Gene Family AT3G19760 27.790 1.50e-49 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1414 K14777 - gmx:100775796 678.322