Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1409 ATGCAGAGCGTGGCTTTCACTCtctcctcttctcttcctcttcacaATCCTCGCGGACTGTCTTGCTCCTCTCGATTCCCTCCCATACGTCTCTCTGCTTCCTCTTCTTCTAAGCCAAACGAAAGCGCTtcctcttcatcttcctcctcctctttccaTCGCCGGTACTggtcctttgcttcttcttcttcttcctcttttaaattCAGGCCTTCCACTACCTTGCCCGCCGCGCCTGCGTCCTCCGATTCCGATGTCACTCGCTTTGAGGCTCGGGCCACTTCCGTCTCCGACAGCGCCGATGAGAGCTCCAACTCCTTGTTCAAAACGCTTCAGCTTGGAGCCTTGTTTGGCCTCTGGTACATCTTCAATATATACTTCAATATAAACAATAAGCAGGTATTGAAGGCGTACCATTTTCCAGTAACTGTGACTGCAATTCAATTTGCTGTTGGGACTGTCCTTGTCTCTTTTATGTGGATTTTTAATCTCTATAAAAGGCCTAAAATAAGTGGTTCTCAGCTTGCAGCTATTCTTCCACTGGCTCTGGTTCATACTTTAGGGAACCTTTTCACTAATATGAGTCTAGGAAAGGTAGCTGTATCATTCACTCACACAATTAAAGCAATGGAGCCTTTCTTTACAGTGGTCCTTTCTGTTATATTCCTCGGAGAGATGCCAACTGCATGGGTGGTTGCTTCCCTTTTGCCTATTGTTGGTGGAGTGGCACTGGCATCAGTTACTGAGGTCTCCTTCAATTGGGCTGGATTTTGGAGTGCTATGGCATCCAATTTGACATTTCAATCTCGTAATGTTCTCAGCAAAAAGGTCATGGTTAATAAAGAGGAATCAATGGACAATATAAATCTCTTCTCAATAATAACCGTTATGTCCTTCTTTTTGTTAGCACCTGTGACTATCTTCATGGAGGGTATCAAATTTACCCCTGCATACCTGCAATCTGCTGGGTTAAATGTTAGAGAATTGTGCATCAGATCTCTTCTTGCTGCACTCTGTTTCCATGCATATCAACAAGTTTCTTATATGATATTGCAGAGGGTATCACCTGTTACCCACTCTGTGGGCAATTGTGTGAAGAGGGTTGTGGTCATTGTGAGCTCTGTCCTCTTCTTCAAAACACCTGTCTCACCTGTTAACGCTCTTGGTACTGGTATGGCTCTTGCCGGAGTCTTCCTTTATTCAAGGGTAAAGCGAGTTAAGCCAAAGCCAAAGGCAGCATAA 1242 0.4171 MQSVAFTLSSSLPLHNPRGLSCSSRFPPIRLSASSSSKPNESASSSSSSSSFHRRYWSFASSSSSSFKFRPSTTLPAAPASSDSDVTRFEARATSVSDSADESSNSLFKTLQLGALFGLWYIFNIYFNINNKQVLKAYHFPVTVTAIQFAVGTVLVSFMWIFNLYKRPKISGSQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFTVVLSVIFLGEMPTAWVVASLLPIVGGVALASVTEVSFNWAGFWSAMASNLTFQSRNVLSKKVMVNKEESMDNINLFSIITVMSFFLLAPVTIFMEGIKFTPAYLQSAGLNVRELCIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVLFFKTPVSPVNALGTGMALAGVFLYSRVKRVKPKPKAA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1409 413 Pfam Triose-phosphate Transporter family 111 401 IPR004853 -
Sto3g1409 413 MobiDBLite consensus disorder prediction 32 53 - -
Sto3g1409 413 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 36 387 - -
Sto3g1409 413 PANTHER SOLUTE CARRIER FAMILY 35 36 387 - -
Sto3g1409 413 SUPERFAMILY Multidrug resistance efflux transporter EmrE 325 405 - -
Sto3g1409 413 SUPERFAMILY Multidrug resistance efflux transporter EmrE 158 247 - -
Sto3g1409 413 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 111 411 IPR004696 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1409 Sto-Chr3 10293007 10296291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1409 1 413 Antiporters AT5G33320 69.212 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1409 K15283 - pop:7457744 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1409 3 10293007 10296291 Sto12g0779 12 4893966 4895431 CCT
Sto3g1409 3 10293007 10296291 Sto12g0779 12 4893966 4895431 ECH
Sto3g1409 3 10293007 10296291 Sto3g1409 3 10293007 10296291 ECH