Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1403 ATGGAGAACCTGTTTGGCTTCCACTGCACCGCCGGTTACTCCGAGCAGTCACCAATGGCTCCGTCGTTACAAACAACCGATCTCCACGACGACGGCTTCTCGCCGCACCATATGGTTCCGCTGAATTGGAATTCAGCGTGCGGACCGGAGCAATTTGCCTCGTCTGGTTTTTCTTCGTCGGCGGCAATATCTGATGCGCCGTCGTCGGCGGTGGCCGAGGTTCAGAGAGCGGAGGCCGGCctggaggaagaggaggaggttTCTAAACAACTTCGCGCTAAAATCGCTTGTCATCCTCTTTATCCTCAATTACTGGAAGCGTATATCGATTGCCAGAAGGTGGGAGCGCCTCCGGAGATAGCGAAACTGTTAGATGAAATCGGACGAGAGAATGGCGATCTATGTCAGAGATCGGCTTGCTTGGGAGCAGATCCCGAGCTCGACGAATTCATGGTCTCTTTCTTGGAAAACTCACAGTTCTTCAGAGTTCAACAGTTCCAAACCCTAATACTAACAGAAACGTATCGCGATTTGTTGGTAAAGTACAAATCGGATCTCTCAAAGCCTTTTGACGAAGCAACCGCGTTTCTTAACAACATGGAAGCGCAGCTCAACTCCATCTGCAGCGGTTCTTACCGAAACTACAGTCCTggtctctctcttttctctctgctctctttaatttaa 687 0.4672 MENLFGFHCTAGYSEQSPMAPSLQTTDLHDDGFSPHHMVPLNWNSACGPEQFASSGFSSSAAISDAPSSAVAEVQRAEAGLEEEEEVSKQLRAKIACHPLYPQLLEAYIDCQKVGAPPEIAKLLDEIGRENGDLCQRSACLGADPELDEFMVSFLENSQFFRVQQFQTLILTETYRDLLVKYKSDLSKPFDEATAFLNNMEAQLNSICSGSYRNYSPGLSLFSLLSLI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1403 228 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 171 214 - -
Sto3g1403 228 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 154 - -
Sto3g1403 228 Pfam KNOX1 domain 91 131 IPR005540 GO:0003677|GO:0005634
Sto3g1403 228 Pfam KNOX2 domain 173 208 IPR005541 GO:0003677|GO:0005634
Sto3g1403 228 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 171 214 - -
Sto3g1403 228 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 154 - -
Sto3g1403 228 Coils Coil 74 94 - -
Sto3g1403 228 SMART KNOX2_2 137 209 IPR005541 GO:0003677|GO:0005634
Sto3g1403 228 SMART KNOX1_2 89 133 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1403 Sto-Chr3 10241777 10243161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1403 1 210 Homeobox Transcription Factor Family AT1G23380 40.265 1.67e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1403 - - vvi:100243290 163.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1403 3 10241777 10243161 Sto3g1403 3 10241777 10243161 ECH