Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1402 CTGACAAATGACAACACCGATCGAGAAGAGGGCactctctcaagtctcaactcaAAGCTGAGTTTTGAGGGTCGTGGCTTTGCTTCGCAGACAAGTCTAGTGTCTGTGATACGACACAACAAACTTTTATTCCCTCTTTATTTGCTTTCCCCTTCCTCGGTCTTTAGTCACCGCGATGAAGATACTGGATCATCCGAAGAGGACCTTAATAGAGAAGAGAAGGAGGAAAACGAGTCTAAGAGGATAAATGAAGATCGAGAGTTGAAGGATAAGCTTCTACGTAGATATAGTGGCTATATTAGTGGTCTTAAGCATGAATTttcgaaaaagaagaagaaagaaaagctaCCAAAAGAAGCAAGACAAATATTACTTGCATGGTGGAATGTTCACTTTAAATGGCCATACCCGACGGAAGCAGACAAAGTTGCCTTAGCTGAATGGACAGGTCTGGATCAGAAGCAGATAAATAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCGACGGAGGAAATGCAAGCTGCAGTGTTGGATGGCCTCTATGGACCTTTTTCCACCAGTGACTGA 573 0.3979 LTNDNTDREEGTLSSLNSKLSFEGRGFASQTSLVSVIRHNKLLFPLYLLSPSSVFSHRDEDTGSSEEDLNREEKEENESKRINEDRELKDKLLRRYSGYISGLKHEFSKKKKKEKLPKEARQILLAWWNVHFKWPYPTEADKVALAEWTGLDQKQINNWFINQRKRHWKPTEEMQAAVLDGLYGPFSTSD 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1402 190 SUPERFAMILY Homeodomain-like 108 182 IPR009057 -
Sto3g1402 190 MobiDBLite consensus disorder prediction 59 82 - -
Sto3g1402 190 Pfam Homeobox KN domain 127 166 IPR008422 GO:0003677|GO:0006355
Sto3g1402 190 MobiDBLite consensus disorder prediction 56 82 - -
Sto3g1402 190 SMART HOX_1 109 174 IPR001356 GO:0003677
Sto3g1402 190 Pfam ELK domain 87 108 IPR005539 GO:0003677
Sto3g1402 190 CDD homeodomain 121 170 IPR001356 GO:0003677
Sto3g1402 190 Gene3D - 104 178 - -
Sto3g1402 190 ProSiteProfiles 'Homeobox' domain profile. 107 170 IPR001356 GO:0003677
Sto3g1402 190 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 55 189 - -
Sto3g1402 190 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Sto3g1402 190 ProSiteProfiles ELK domain profile. 87 107 IPR005539 GO:0003677
Sto3g1402 190 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 55 189 - -
Sto3g1402 190 SMART ELK_2 87 108 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1402 Sto-Chr3 10233822 10236097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1402 64 188 Homeobox Transcription Factor Family AT1G23380 65.079 9.27e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto3g1402 Homeobox_KN 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1402 - - ccaj:109811765 209.534