Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1388 ATGACAGTTGAGAGAGTGgctatagagagagagagagagtggtaTGGTGTGGTGGTAGTAGGAGAGAAGCGTAACGCCGACTCAGACGCTGCGTGTCTTCTCACAATAAGCTTCATGGACACTCGGACACTACCCATTGGCTTCGCCCTCACTgaagaaaactccaatttcaAAAcccctctctcttcttttcgTCGCTTCTCATATTTCTATTCAATTTCAACCCATACACCTTACCCCCAGTGTGAGCTTCATCTTCTCTTTCTGAGAAAACAAGGTGTGATCAGCTATGGCGGAATCATCCTCATCCGCGACTCAAAAGAGCGAGTCGACTTCGGATTCTTCGTGCTTGCTTTCGGGAAAAGTAGCAAAAGGGATTATTCCACAGCAATATTGGAACGTAAGAAGTCTCCAAACCGTCTTATTGTTGATGAGGCTGTTAATGATGACAATTCTGTGGTAACCTTGCATCCTGCTACAATGGAAAAGCTTCAGTTTTTCCGAGGTGACACTGTTCTGATAAAGGGAAAGAAGCGAAGGGACACAGTTTGCATTGTTCTTGCTGATGAACAGTGTGAAGAACCAAAAGTTAGGATGAATAAAGTTGTTCGATCTAATCTTAGGGTACGACTTGGGGATGTGGTTTCTGTCCATCAATGTTCGGATGTGAAGTATGGGAAGAGGGTTCACATCCTTCCTGTTGATGATACTATTGAGGGCGTAACTGGCAACTTGTTTGATGCATATCTTAAACCATATTTTCTGGAGTCTTACCGGCCTGTGCGGAAAGGTGATCTGTTTCTTGTTAGGGGTGGGATGAGAAGTGTTGAATTCAAAGTAATAGAGACAGATCCTGGTGAATACTGTGTTGTGGCACCAGATACTGAAATATTCTGTGAGGGAGAACCCATCAAACGTGAGGATGAAGAGAGATTAAATGAAGTTGGCTATGATGATGTAGGTGGTGTTAGGAAGCAAATGGCTCAAATACGTGAGTTAGTGGAGCTTCCTCTTAGACACCCACAGCTTTTCAAATCAATTGGTGTTAAGCCTCCAAAAGGAATCTTGCTTTATGGACCACCTGGTTCTGGAAAGACTCTCATTGCAAGAGCAGTAGCTAATGAAACAGGTGCATTCTTCTTTTTGATTAATGGACCAGAAATAATGTCAAAGCTGGCTGGTGAGAGTGAAAGCAACCTGAGGAAGGCATTTGAAGAAGCTGAAAAGAATTCCCCTTCTATCATTTTCATTGACGAATTAGATTCAATTGCTCCTAAGAGAGAAAAGACGCATGGTGAAGTGGAGAGGCGAATTGTCTCACAACTTTTGACTCTAATGGATGGCCTCAAGACCCGATCACATGTTATCGTTATTGGAGCCACCAATAGGCCCAATAGCATTGATCCTGCACTCAGGAGGTTTGGGAGATTTGATCGAGAGATTGATATTGGTGTACCAGATGAAATTGGAAGATTGGAGGTTCTTAGAATTCACACTAAAAACATGAAACTTTCAGATGATGTTGATCTTGAAAGAGCTGCTAGAGACACCCATGGTTATGTTGGTGCAGATCTTGCTGCTCTTTGCACAGAGGCTGCACTGCAGTGTATTCGGGAGAAAATGGATGTGATTGACTTGGAGGATGAAACAATTGATGCTGAGGTGTTGAATTCCATGGCTGTTACCAATGAACACTTCCAAACGGCTTTGGGTGCATCAAATCCATCAGCCTTGCGTGAAACAGTTGTGGAGGTTCCTAATGTTTCCTGGGAAGATATTGGTGGCTTGGAGAATGTTAAAAGGGAGCTTCAAGAGACCGTTCAATACCCAGTGGAACATCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCAAAAGGTGTTCTTTTCTACGGACCTCCTGGCTGTGGTAAAACCCTTCTTGCAAAAGCAATTGCTAATGAATGCCAAGCCAACTTTATAAGTGTAAAAGGACCTGAGCTGCTGACAATGTGGTTCGGTGAGAGTGAAGCAAACGTGCGTGAAATATTTGACAAGGCTCGGCAATCAGCTCCATGTGTTCTTTTCTTTGATGAACTTGACTCTATTGCTACCCAGCGTGGCAGTTCTGTAGGAGATGCTGGTGGTGCTGCAGATAGGGTGTTGAACCAACTATTAACAGAAATGGATGGAATGACAGCTAAAAAAACAGTTTTCATCATTGGGGCAACAAACAGGCCAGACATTATAGACCCGGCATTGCTCAGGCCTGGACGTCTGGACCAACTGATATACATCCCATTGCCAGATGAGAATTCGCGCCTTCAAATCTTTAAAGCATGTTTGAGGAAGTCACCACTCTCAAAGGATGTTGACCTAGCAGCTCTTGCCCGTTTTACTCACGGATTTAGCGGTGCTGACATTACAGAAATTTGTCAGCGAGCCTGCAAATATGCCATCAGAGAAGATATTGAGAAGGGCATTGAgaaggagaaaagaaagagagagaaccCTGAAGCTATGGAAGAAGATGACACTGATGAGGTCCCTGAGATAAAGCCAGCCCATTTTGAGGAGTCTATGAAGTTTGCTCGCCGAAGTGTCAGTGATGCCGATATCAGGAAGTACCAACTCTTTGCTCAGACTTTGCAGCAGTCCCGTGGATTTGGATCGGAATTTCGGTTTGCAGATCAAACTGAGAATACTGCTACTGGAGCTTCAGACCCTTTCTCTTCTGCTACTGCTGCCGCCACCGGAGATGATGATGATCTGTACAGCTAA 2760 0.4272 MTVERVAIEREREWYGVVVVGEKRNADSDAACLLTISFMDTRTLPIGFALTEENSNFKTPLSSFRRFSYFYSISTHTPYPQCELHLLFLRKQGVISYGGIILIRDSKERVDFGFFVLAFGKSSKRDYSTAILERKKSPNRLIVDEAVNDDNSVVTLHPATMEKLQFFRGDTVLIKGKKRRDTVCIVLADEQCEEPKVRMNKVVRSNLRVRLGDVVSVHQCSDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSDDVDLERAARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGASNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDENSRLQIFKACLRKSPLSKDVDLAALARFTHGFSGADITEICQRACKYAIREDIEKGIEKEKRKRENPEAMEEDDTDEVPEIKPAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADQTENTATGASDPFSSATAAATGDDDDLYS 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1388 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 874 IPR027417 -
Sto3g1388 919 SUPERFAMILY Cdc48 domain 2-like 222 314 IPR029067 -
Sto3g1388 919 Pfam AAA+ lid domain 783 824 IPR041569 -
Sto3g1388 919 Pfam AAA+ lid domain 507 549 IPR041569 -
Sto3g1388 919 ProSitePatterns AAA-protein family signature. 455 473 IPR003960 GO:0005524|GO:0016887
Sto3g1388 919 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 120 891 - -
Sto3g1388 919 Gene3D - 765 873 - -
Sto3g1388 919 PANTHER AAA-FAMILY ATPASE 120 891 - -
Sto3g1388 919 Gene3D - 119 222 - -
Sto3g1388 919 Gene3D - 486 577 - -
Sto3g1388 919 Pfam Cell division protein 48 (CDC48), domain 2 242 305 IPR004201 -
Sto3g1388 919 SMART CDC48_N_2 140 223 IPR003338 -
Sto3g1388 919 MobiDBLite consensus disorder prediction 893 919 - -
Sto3g1388 919 MobiDBLite consensus disorder prediction 893 907 - -
Sto3g1388 919 CDD AAA 594 761 - -
Sto3g1388 919 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 141 877 IPR005938 GO:0016787
Sto3g1388 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 576 IPR027417 -
Sto3g1388 919 Pfam ATPase family associated with various cellular activities (AAA) 628 761 IPR003959 GO:0005524|GO:0016887
Sto3g1388 919 Pfam ATPase family associated with various cellular activities (AAA) 355 484 IPR003959 GO:0005524|GO:0016887
Sto3g1388 919 Gene3D - 578 761 IPR027417 -
Sto3g1388 919 Gene3D - 320 484 IPR027417 -
Sto3g1388 919 SMART AAA_5 624 763 IPR003593 -
Sto3g1388 919 SMART AAA_5 351 487 IPR003593 -
Sto3g1388 919 CDD AAA 321 484 - -
Sto3g1388 919 ProSitePatterns AAA-protein family signature. 731 749 IPR003960 GO:0005524|GO:0016887
Sto3g1388 919 SUPERFAMILY ADC-like 136 220 IPR009010 -
Sto3g1388 919 Pfam Cell division protein 48 (CDC48), N-terminal domain 140 221 IPR003338 -
Sto3g1388 919 Gene3D - 223 319 - -
Sto3g1388 919 SMART CDC48_2_2 240 306 IPR004201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1388 Sto-Chr3 10135014 10139650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1388 620 819 Calmodulin-binding Proteins AT3G56690 42.157 3.91e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1388 K13525 - gmx:100798680 1507.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1388 3 10135014 10139650 Sto3g1388 3 10135014 10139650 ECH