Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1380 ATGGCTGGATGCATCTTCGCCCCTTACTTCCCACCCGAGGAGCCTCAGAAATTCGCCAACGTCCACAAGATCTTCGGCGCCAGCAACGTCACCAAGCTCCTCAACGACCTCCTCCCTCACCAGCGCGAGGACGCCGTCAATTCCCTCGCCTACGAGGCCGAGGCCCGTGTCCGCGACCCCGTCTACGGCTGCGTCGCCGCCATCTCCTTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACGCCGCCAACGCCGACCTCCTCCGCTACGCCTCCCCCTCCATCATCCCCatgcctcctcctcctcctcatacTCCCTATTATGCCCATACCCAACCCTCTTCTCTTCTTCCTTATTCTCTTCCTTGGACTGATCATTCCTCTTCTCATCATGATTTCCATGCACCaccaggaggaggaggaggaggtggtgcTCCagCTAGAGGCTCAGCTCAATTCTTCATGTATCTGAAACAGTAA 486 0.5247 MAGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVAAISFLQRQVHRLQKELDAANADLLRYASPSIIPMPPPPPHTPYYAHTQPSSLLPYSLPWTDHSSSHHDFHAPPGGGGGGGAPARGSAQFFMYLKQ 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1380 161 Coils Coil 68 88 - -
Sto3g1380 161 Pfam Lateral organ boundaries (LOB) domain 3 86 IPR004883 -
Sto3g1380 161 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 1 117 - -
Sto3g1380 161 ProSiteProfiles LOB domain profile. 1 89 IPR004883 -
Sto3g1380 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1380 Sto-Chr3 10034654 10036173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1380 1 93 AS2 family AT5G63090 91.398 3.69e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto3g1380 LOB 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1380 - - gmx:100775922 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1380 3 10034654 10036173 Sto12g0752 12 4712205 4713855 CCT
Sto3g1380 3 10034654 10036173 Sto12g0752 12 4712205 4713855 ECH
Sto3g1380 3 10034654 10036173 Sto3g1380 3 10034654 10036173 ECH