Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1377 aTGGCTAACCCCGAAGATGAAAAGAGCCTCCAAGAAGAACTCTCTCTTCCCATATTGCTCGGAGACCGAGTCATCAAAGCTGCCCAAGAGGCCCAATCCTCCAAGTCCGACTGCTCTGACGTCGCCAAGCAAGTTGAGCGTCTCTCCGCCATGCTCCGAGCCATCGTCCGCCTCGCCTCCGCCACCACCACTTCCTCCTCCCTCTACGACCGACCCATCCGCCGGATTCTCGCCGACGTCTCCAAGAACCTCGAACGCGCCCTAACCCTCCTCCGCAAGTGTAAGAAACACGGCGCCCTCTTCCGCCATGTCTTCTCCATCACCTCCGCCGCCGACTTCCGCAAGCTCTCCAACCTTCTCGAATCTTCCATCGGCGACATGAAGTGGCTTCTCAGCATCCTCGACTCCTCCGACGGCGCTACCAGTCTCTCCCTCCCTCCCATCGCCAGCAACGACCCCATCCTCGCTTGGGTCTGGTCCTTCATCTCCGCCCTCCAAATGGGTCAGCTCAAGGACCGAGCCGATGCAGCCAACGAGCTCGCTTCCGTCGCCAACGACAACGATCGCAACAAGATCATCATCATGGAAGAAGGCGGGATTCCCCCATTGCTGAAGCTTCTCAAGGAAGCTGCATCACCCGACGCTCAAATCGCCGCCGCCAATGCTCTCGTCAATATCGCCTCTGACCAACACAGAGTCGTCGAATTCATCGTGGAATCTCTCGGGGTTCCGATTATTGTCCAGGTTCTCGGCGATTCGCCGATTAGGGTTCAGGTTGCTGTAGCAAATTTGGTGTCAAAAATGGCAGAATTGGGGACTATTGCTCAAGAGGAGTTTGTGAGAGTGAATGTGACTAGACCATTGATTTCCTTATTGTGTATGGACACTGTTCTGGATCGACCCAGCATTCATTCACTTGTTCTGAATttaacatcatcatcatctgggagTTCTTCTGATCATAGGAAGGAAAGGGAGGGTGAGAGTtatgagatgaagaagaagatcaaaACAAGCTGTGCAGAGGCATTGTGGAAACTCTCAAAAGGGAGTGAAGCAACATGCAGGAAGATCACAGAGACCAAAGGTTTGCTCTGTTTGGCTAAATTGATTGAGTCTGAAACTGCAGAATTGCAGTTCAATTGCCTCATGGCAGTCATGGAGATCACTGTAGTAGCAGAATTCAATGCTGAGCTTAGAAGAGTGGCTTTTAAGCCTACTGCTCCTGCAGCAAAAGCTGTTTTGGATCAGCTTCTGAGGTTGATTCAAAATGATCAAACGGATTCAGTATTGCAAATTCCTGCCATTAAATCAATAGGTTCATTGGCAAGAAACTTCCCTGCAAAAGCACCTCAAATTGTGGGACCTTTGGTAGCCCAACTTGGTAGTGGTAATGTGGATGTGGCCATTGAAGCTGCCATTGCTTTGAGGAAATTTGTGTGTCCGGATAACTACAATTTTGCGTGCCATTCCAAGGCAATAATAATGGAGTTTGATGGAGTTCCTAGTGTAATGAGATTGCTTCAGAGGAATGATCGGGCAAGAAAGCATGGGCTAGTTCTACTGTGTTATCTTGCTATGAATGTAGGTGATAGTAAGGCTCTTGAGCAAGCACGTGCATTGAGTACTCTCAAGGGACTAGAGCGTCCTGTTTTGGCTCAACATCCTGAGATGAAAGAACTCATGACTAAAGCCATTGATAACCTCATTCTTTATCAGACAGGAGCTCAATTGCACAGACAGgtatataatataagaaCCATCCATGATCCATCTGGTTCTGGCTGTATATTCCAACCTGATGAGTGA 1809 0.4809 MANPEDEKSLQEELSLPILLGDRVIKAAQEAQSSKSDCSDVAKQVERLSAMLRAIVRLASATTTSSSLYDRPIRRILADVSKNLERALTLLRKCKKHGALFRHVFSITSAADFRKLSNLLESSIGDMKWLLSILDSSDGATSLSLPPIASNDPILAWVWSFISALQMGQLKDRADAANELASVANDNDRNKIIIMEEGGIPPLLKLLKEAASPDAQIAAANALVNIASDQHRVVEFIVESLGVPIIVQVLGDSPIRVQVAVANLVSKMAELGTIAQEEFVRVNVTRPLISLLCMDTVLDRPSIHSLVLNLTSSSSGSSSDHRKEREGESYEMKKKIKTSCAEALWKLSKGSEATCRKITETKGLLCLAKLIESETAELQFNCLMAVMEITVVAEFNAELRRVAFKPTAPAAKAVLDQLLRLIQNDQTDSVLQIPAIKSIGSLARNFPAKAPQIVGPLVAQLGSGNVDVAIEAAIALRKFVCPDNYNFACHSKAIIMEFDGVPSVMRLLQRNDRARKHGLVLLCYLAMNVGDSKALEQARALSTLKGLERPVLAQHPEMKELMTKAIDNLILYQTGAQLHRQVYNIRTIHDPSGSGCIFQPDE 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1377 602 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 230 IPR000225 GO:0005515
Sto3g1377 602 SUPERFAMILY ARM repeat 162 549 IPR016024 -
Sto3g1377 602 PANTHER ARMADILLO REPEAT ONLY 4 5 583 - -
Sto3g1377 602 Gene3D - 12 133 IPR036537 GO:0007166
Sto3g1377 602 Gene3D - 402 584 IPR011989 -
Sto3g1377 602 SMART arm_5 351 391 IPR000225 GO:0005515
Sto3g1377 602 SMART arm_5 186 228 IPR000225 GO:0005515
Sto3g1377 602 SMART arm_5 490 527 IPR000225 GO:0005515
Sto3g1377 602 SMART arm_5 229 270 IPR000225 GO:0005515
Sto3g1377 602 MobiDBLite consensus disorder prediction 311 330 - -
Sto3g1377 602 PANTHER ARMADILLO REPEAT ONLY 1 PROTEIN 5 583 - -
Sto3g1377 602 Gene3D - 158 401 IPR011989 -
Sto3g1377 602 Pfam Armadillo/beta-catenin-like repeat 187 228 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1377 Sto-Chr3 9986591 9988681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1377 125 310 U-box Gene Family AT1G23030 28.643 2.73e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1377 - - gmx:100813824 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1377 3 9986591 9988681 Sto3g1377 3 9986591 9988681 ECH