Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1374 ATGAATTCTTACGACAACAGATATACAGACTCCGCTTCTTATCGCGACCGTCGGAGTGATTTAGTTGGATCTAGACCGTCTATGGCGCCTCCAGTGTTTGGCGGTGCCGCCTCGAGCTATGGCCGCGGTGGTCCCGCTCCGCCTGGGAGTGCTTCTGGAACGGCACCTTTTGCCCCAAATCATAATGGATTACCGCCGTTTATGCCGCCTCCTGGAGGTTTTGATATAGGTAGAAGTGGTGGAAGCAGCCAAAGGGGCTTCGGTGGTAGACATGGCAATAGTGGTGGAGCTAGAGGAAGAGATCGTGGTTATAGTTCGAATGGAGGTCGGGGCAGTGGTAGATTTGGTGGAGAACGCGGTGGTAGGACCTCGTGGAGAGGTGGAAGTGCTGGCAGTGGCCGAGGCCGTGGCCGTGATGGTGGGAGAGGAGGAAGACATAGTGGATCCTCCAGGGATGACTTGGACAATGTTGCACTTCCGAAGCAAGAATTTAGAAATTTGGTCCCCTTTGAGAAGAATTTTTACATTGAAAGTTCATCGGTGCGGGCAATGTCTGATCATGAGCTTATGGTTTACCGTGCCAGTAGAGAGATTACAGTGCAAGGGCATGACATTCCAAAACCAACTCCGATGTTTCAAGATGCAAATTTTCCTGGTTACTGTCTTGAGGTGATTGCCAATTTGGGTTTTGTTGAGCCTACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTGAAGGGTAGAGATCTAATTGGCATTGCTGAGACTGGCTCTGGAAAAACACTCGCGTATCTGCTTCCTGCCTTTGTGCATGTCAATGCACAGCCTCGATTGGTACAAGGCGAAGGACCCATTGTCTTAATTCTGGCTCCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAAGCTTTAAAATTTGGTTCACGAGCAAATATTCGAAGCACTTGCATCTATGGTGGTGCACCAAAGGGGCCACAAATTCGCGATCTTAGACGCGGTGTTGAGATTGTTATTGCTACACCTGGTCGCTTGATAGATATGTTGGAAGCTCAGCACACAAACCTGCAAAGAGTGACTTATCTTGTGTTGGATGAAGCTGATCGAATGCTGGACATGGGCTTTGAACCTCAAATACGGAAAATTGTGGGGCAGATCCGACCTGATAGGCAGACATTGTATTGGAGTGCAACATGGCCAAAGGAAGTTGAAACTCTGGCAAGGCAGTTTCTACACAACCCATATAAGGTAATTATTGGATCACCAGAGCTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTATGACAGAAGTTGAGAAATACAATAGATTGATCAGACTGCTCAAAGAAGTGATGGATGGTAGTCGAATTCTGATATTTATGGAGACAAAAAAGGGTTGTGACCGAGTTACAAGACAATTGAGAGTGGATGGCTGGCCTGCACTATCCATTCATGGCGATAAAAGCCAGTCCGAAAGGGACTGGGTCTTGGCTGAGTTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGATGTTTTATGCCTGGTGATTTAGTGGTTGGATTTACAAGCCCATCCACAGTAATGGAGCTGGTTGTCTCTGCAGCCTGGTTGACTCATACATGCTTAGTCGATAATTGGATATGGGAGGTGGAAGTGATGGTGAAGCTGCTCCTTATCCCTGCAAGGTTAAGGTGGGCACATTTATATGATGAATGTGTTGACTTTGAGTTTGGTCTCCGAAATCTTAGGGATGTGAAGGACATAAAGTGTGTGATTAATTATGATTTTCCAACAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCTTACACATTTTTTACACATGCAAACGCCAGATTTGCTAGGGAACTGATCAAGATCTTGCACGATGCTGGCCAGGTTGTGAGTCCTAAGCTCTCTGCCTTGGGTCGGTCACCTGGTTTTCTTTCTAAAAAtggaTCTGGAGGAAACTTCCGGTCCAGAGGAAGGGGAGGTAGTGGTAATCGGGGTTCAATATCAGGATCCAATTCCATTCCTCTAGGTTCAAAGCCTTGGTAG 2118 0.4679 MNSYDNRYTDSASYRDRRSDLVGSRPSMAPPVFGGAASSYGRGGPAPPGSASGTAPFAPNHNGLPPFMPPPGGFDIGRSGGSSQRGFGGRHGNSGGARGRDRGYSSNGGRGSGRFGGERGGRTSWRGGSAGSGRGRGRDGGRGGRHSGSSRDDLDNVALPKQEFRNLVPFEKNFYIESSSVRAMSDHELMVYRASREITVQGHDIPKPTPMFQDANFPGYCLEVIANLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAFVHVNAQPRLVQGEGPIVLILAPTRELAVQIQEEALKFGSRANIRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPKEVETLARQFLHNPYKVIIGSPELKANQSINQVVEVMTEVEKYNRLIRLLKEVMDGSRILIFMETKKGCDRVTRQLRVDGWPALSIHGDKSQSERDWVLAEFKSGRSPIMTATDVAARGLGCFMPGDLVVGFTSPSTVMELVVSAAWLTHTCLVDNWIWEVEVMVKLLLIPARLRWAHLYDECVDFEFGLRNLRDVKDIKCVINYDFPTSLEDYVHRIGRTGRAGAKGTAYTFFTHANARFARELIKILHDAGQVVSPKLSALGRSPGFLSKNGSGGNFRSRGRGGSGNRGSISGSNSIPLGSKPW 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1374 705 Pfam Helicase conserved C-terminal domain 440 624 IPR001650 -
Sto3g1374 705 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 210 238 IPR014014 GO:0003724
Sto3g1374 705 Gene3D - 419 664 IPR027417 -
Sto3g1374 705 MobiDBLite consensus disorder prediction 1 158 - -
Sto3g1374 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 519 IPR027417 -
Sto3g1374 705 CDD SF2_C_DEAD 429 633 - -
Sto3g1374 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 241 416 IPR014001 -
Sto3g1374 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 418 IPR027417 -
Sto3g1374 705 Gene3D - 183 418 IPR027417 -
Sto3g1374 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 444 663 IPR001650 -
Sto3g1374 705 MobiDBLite consensus disorder prediction 138 158 - -
Sto3g1374 705 MobiDBLite consensus disorder prediction 672 705 - -
Sto3g1374 705 SMART ultradead3 229 432 IPR014001 -
Sto3g1374 705 CDD DEADc_DDX5_DDX17 222 416 - -
Sto3g1374 705 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 81 519 - -
Sto3g1374 705 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 594 696 - -
Sto3g1374 705 PANTHER LD32873P 594 696 - -
Sto3g1374 705 PANTHER LD32873P 81 519 - -
Sto3g1374 705 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 362 370 IPR000629 -
Sto3g1374 705 SMART helicmild6 469 624 IPR001650 -
Sto3g1374 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 657 IPR027417 -
Sto3g1374 705 Pfam DEAD/DEAH box helicase 234 405 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1374 Sto-Chr3 9975498 9978963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1374 594 662 Eukaryotic Initiation Factors Gene Family AT3G19760 42.029 1.09e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1374 K12823 - gmx:100777610 695.271