Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1319 ATGTCCATCACAACTATACCTTCGTTCAAGACCCTCACAACGGCAGATTCACGCCTTCTCTCTTCCCCCTCTCTAATCTCCAGCAGAACCAAATTCCCTTATATCTCCATTCCTTCTAAACCCCTTCAACTGCAAGTATCCTCATGCTCCAATTCCTCCCTCTTCTTACCATCTCTGTCTCTCTGTAGGAAAACCCACCATCTCTCTATACTCACATTCGTAGCCCAGACTTCCGATTGGGCTCAAGAAGACAACACCGCCACTCTTGAAGAAGGAGAGCAAGACGAGGACGGCCCCGAAGCTACTCTTTCAGATTGGGAGGCTCAGGGTGAAGGTGAAGCGACCGAGGGTAGCGAGGAACCGCCGGAAGAGGCGAAACTATTTGTGGGGAACTTGCCTTATGATGTTGATAGTCAGAGATTGGCCATGCTTTTTGAGCAGGCCGGAACGGTGGAAATTGCAGAGGTCATTTATAATAGAAGCACTGACCAGAGTCGCGGGTTCGGATTTGTAACCATGAGtacagttgaagaagctgagaagGCTGTGGACAAGTTCAATCGCTatGATTTAGATGGAAGACTGTTGACTGTTAACAAGGCTGCTCCAAGAGGAGCACAGCCAGAACGGCCACCTCCTCGTGTCTTTGAACCTTCCTTCAGAGTCTATGTTGGCAACTTGCCATGGGATGTCGATAATGCTCGGTTGGAGCAGATTTTCAGTGAACATGGGAAAGTTGTGAGTGCTCGGGTTGTCTATGACAGAGAGACTGGTCGATCTCGTGGTTTTGGCTTCGTTACATTTTCCAGTGAGACTGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGATGGGAGGGCACTTAGAGTGAATGTTGCTGAGGAAAGGCCCAGGCGTGGCTCATATTGA 918 0.4782 MSITTIPSFKTLTTADSRLLSSPSLISSRTKFPYISIPSKPLQLQVSSCSNSSLFLPSLSLCRKTHHLSILTFVAQTSDWAQEDNTATLEEGEQDEDGPEATLSDWEAQGEGEATEGSEEPPEEAKLFVGNLPYDVDSQRLAMLFEQAGTVEIAEVIYNRSTDQSRGFGFVTMSTVEEAEKAVDKFNRYDLDGRLLTVNKAAPRGAQPERPPPRVFEPSFRVYVGNLPWDVDNARLEQIFSEHGKVVSARVVYDRETGRSRGFGFVTFSSETEMNDAIAALDGQSLDGRALRVNVAEERPRRGSY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1319 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Sto3g1319 305 Gene3D - 208 304 IPR012677 -
Sto3g1319 305 Gene3D - 75 207 IPR012677 -
Sto3g1319 305 PANTHER OS02G0815200 PROTEIN 105 304 - -
Sto3g1319 305 PANTHER OS02G0815200 PROTEIN 1 94 - -
Sto3g1319 305 CDD RRM_HP0827_like 221 297 - -
Sto3g1319 305 CDD RRM_HP0827_like 126 203 - -
Sto3g1319 305 MobiDBLite consensus disorder prediction 88 122 - -
Sto3g1319 305 MobiDBLite consensus disorder prediction 88 102 - -
Sto3g1319 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Sto3g1319 305 SMART rrm1_1 126 199 IPR000504 GO:0003723
Sto3g1319 305 SUPERFAMILY RNA-binding domain, RBD 208 303 IPR035979 GO:0003676
Sto3g1319 305 SUPERFAMILY RNA-binding domain, RBD 118 212 IPR035979 GO:0003676
Sto3g1319 305 PANTHER RIBONUCLEOPROTEIN 1 94 - -
Sto3g1319 305 PANTHER RIBONUCLEOPROTEIN 105 304 - -
Sto3g1319 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 203 IPR000504 GO:0003723
Sto3g1319 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 292 IPR000504 GO:0003723
Sto3g1319 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 196 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1319 Sto-Chr3 9580957 9583670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1319 98 302 Eukaryotic Initiation Factors Gene Family AT3G16380 32.864 1.65e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1319 - - hbr:110672501 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1319 3 9580957 9583670 Sto12g0715 12 4525434 4527514 CCT
Sto3g1319 3 9580957 9583670 Sto12g0715 12 4525434 4527514 ECH
Sto3g1319 3 9580957 9583670 Sto3g1319 3 9580957 9583670 ECH