Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1310 ATGGATGGAAGGCGGCATTCAGTCGATGTTCCTATTTCGAAAACTCTCGTGGCGTTGAGGAGAGTCAGGTCATTGAGGGATCCGTCCACTAATTCCATGAGCAAACTCTGTTCTTCGATTGATAATCTTCACTGGGAGAACAGTTCGGGTAATGGGATATCTCTGCGGTTCTTGGATGCTTCTCGTGCATGTGATTCTGATGATAATGGTACTTTAAGGTCAATGAATTTAAGTAATAAGCTGCACAGAGAGCACGATGCTGTTGATTTTGAATTGAACTGTGGCCATTTCAACTCTAAGCTGAAGTCTTGTTCCGAAGGACAGCAGGATGATGAACTAATTTACTCTGATTTGAATCCGGAGGACAATTCTGGGGATAAGTCGCCGAATGAAAGATGTTATAGCAACCATAGAGGTAAAGAATTGGGTTTAGCTCGTACTGTCCTTCCTATTAACGAGGTGACTTTGCAATCAGGGAGAATAGATCATTCTAAGTTAACGAGGAAGAGTAAGAATCAAGTGAAACCATCTGAAGTAGTGGGTGATAGAGGTAGTCCATGCCTTTCGGTTGGTGATGCTCTCTCAGCCTACAGTTCATCGATGAATATGAATCATGATGTTGATGATAATCACCATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCACCGAGGTTTAGAGAATCAAATCTTTATTCTGATATAGAAGGCCGTCCCTTGATATCCTGGCATGCTGACGAGACTGCTCTCTATGGACATAAAAGCATAAGACACATTGGTGGCGAAATCAGTCCAAATTTGGATACTCCTAGAAGTTTAAGTATGAAATTCAGGCCAAAATCTTTTAATGATTTGGTTGGGCAAAATGTGGTAGCAAGGTCTCTTTTGGGTGCCATCTCTAAAGGAAGGATATCCTCATTCTATTTGTTTCATGGTCCCCGAGGTACAGGGAAGACCTCTGCCTCAAGGATTTTTGCTGCTGCACTGAATTGTCTCTCCCTTGAGGAGGAAAGACCGTGTGGTATTTGCAGAGAATGTGTTTCGTTCTTTTCTGGAAGAAGTAAGGATGTTAGGGAAGTGGATTCTGTGAGAATCAATCGAATGGACAAGGTAAAATCCCTTGTTAAAAATGCAGGCATACCCCCAATTTCCTCACGATTTAAGGTTTTTATTGTTGATGAGTGCCAGTTGATGCATGGGGAAACATGGGCGAACCTTATGAGCAGCCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTAGATAAACTTCCTCGAAGTGCAGTTTCACGGGCCCAAAAGTATCATTTTCCTAAGATAAAAGACTCGGACATTGCAAACAGATTGGAAAAAATTTGTATGGAAGAAGGTCTTGATTTTGAACAGGTTGCTTTGGACTTCATAGCTGCCAAGTCATGTGGTTCTCTTAGGGATGCGGAAATCATGCTTGATCAACTGAGCTTGCTTGGTAAAACAATCACAATTTCCTTAGCCTACGAGCTTACTGGGATCGTTTCTGATGATGAATTGCTTGATTTGCTGGATCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCCCGGGAGCTAATGAGATCAAGGATAGATCCTTTGCAACTTATATCGCAGCTGGCAAATCTCATTATGGACATTCTTGCAGGGAATTGTGTTGGTGGTGTTTCTGAAGTCAGAAGGAGCTTTTCTAGTAGACATAGCTCTGAGGCAGACCTGCAAAAACTAAATCATGCGTTAAGAATACTCTCGGAAACTGAGAAGCAATTGAGAATTTCAAAGAATCAAACAACATGGTTCACTGTCGCCCTTCTACAGTTAAGCTCTGCAGAAGCAAATGATACCAAATTGAGTCTGAGAGATGCATGCAATGGAGATGGTGATTTCTGCAGTACGTCATCTACGGGGGAGAGCTTGAAGCATCTCGCTGCAGGTCAGTGTGATGACAAGTCATATAGATTAGGAGTGCAGCAGGATCACAAAGGAACATTAAGTTCCATATGGTATAAAGCGACAGATTTATGTCAATCTAACAGGCTCAAGACTTTTCTCAGGAAACGGGGGAAGTTGTCTTCACTTTGTGTTAATCAAGGTCTTGCTATTGCGGAGTTGGAGTTCCACCATCATGGCTATGTACGTAGGGCTGAGAAGTCATGGAAACTGATCGCTAGTTCTCTGCAGCTCATATTGGGCTGTAACATTGAATTGAGGATCAATCATGTACCTTGTTCTGATTCTACGTTTTCCAAATTGAAGAGGTCATCTTTCAGTTTCTTTAGTTGTTCCCGCAGAATGCACGGAAAGTCACTGTCCTCTAATGAACAAGGAAGTGAACCAGACTTTACTGATTGCACCTCTCAAAAACCTATGATGAAGGATAGGACTCTAACTTGTACCTCTGATTGTGGATCTCAGGTGCCACAACCTGAGTCTAACCTTCGAATGGAGGTTGTAACAGCATTGAGAGATAGAGAAGGGAATTTGCTGAGTTCAAGGAAAAGCTTATTGAGTGGGTCATGCCAAGAGACTTCAAGGACATCAAGTTCTGGAGTTGATTCCTCTAAGGAAGAGGGATGTGATTATGTGCATTTAGTTTCATCAAACCCTGATTCAGATAATCTGTCAAAATGTTTTCCTCGAACTCTATGGCTTCATAAGAAGAAATTACGTTCTCCAGATCTATCCGAAATGATTTTACAGAGCACCCAACAGCAGAAAGATTTTGTTTTATCTATTCCGAATTACACATGTTCTGAGACATATAGCTGTGCCAATGAACCCTTTGTTTTCTCCAGCAGCTCAAACAATTGTACCAAAGTCGCCGGAAATGAGGAAAGGTAG 2874 0.4175 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNSMSKLCSSIDNLHWENSSGNGISLRFLDASRACDSDDNGTLRSMNLSNKLHREHDAVDFELNCGHFNSKLKSCSEGQQDDELIYSDLNPEDNSGDKSPNERCYSNHRGKELGLARTVLPINEVTLQSGRIDHSKLTRKSKNQVKPSEVVGDRGSPCLSVGDALSAYSSSMNMNHDVDDNHHGCGISCCWSKSPRFRESNLYSDIEGRPLISWHADETALYGHKSIRHIGGEISPNLDTPRSLSMKFRPKSFNDLVGQNVVARSLLGAISKGRISSFYLFHGPRGTGKTSASRIFAAALNCLSLEEERPCGICRECVSFFSGRSKDVREVDSVRINRMDKVKSLVKNAGIPPISSRFKVFIVDECQLMHGETWANLMSSLENLSQHVVFVMITPDLDKLPRSAVSRAQKYHFPKIKDSDIANRLEKICMEEGLDFEQVALDFIAAKSCGSLRDAEIMLDQLSLLGKTITISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLISQLANLIMDILAGNCVGGVSEVRRSFSSRHSSEADLQKLNHALRILSETEKQLRISKNQTTWFTVALLQLSSAEANDTKLSLRDACNGDGDFCSTSSTGESLKHLAAGQCDDKSYRLGVQQDHKGTLSSIWYKATDLCQSNRLKTFLRKRGKLSSLCVNQGLAIAELEFHHHGYVRRAEKSWKLIASSLQLILGCNIELRINHVPCSDSTFSKLKRSSFSFFSCSRRMHGKSLSSNEQGSEPDFTDCTSQKPMMKDRTLTCTSDCGSQVPQPESNLRMEVVTALRDREGNLLSSRKSLLSGSCQETSRTSSSGVDSSKEEGCDYVHLVSSNPDSDNLSKCFPRTLWLHKKKLRSPDLSEMILQSTQQQKDFVLSIPNYTCSETYSCANEPFVFSSSSNNCTKVAGNEER 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1310 957 CDD HLD_clamp_pol_III_gamma_tau 445 508 IPR045085 -
Sto3g1310 957 SUPERFAMILY post-AAA+ oligomerization domain-like 509 619 IPR008921 GO:0003677|GO:0006260
Sto3g1310 957 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 272 618 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Sto3g1310 957 Pfam DNA polymerase III, delta subunit 288 445 - -
Sto3g1310 957 MobiDBLite consensus disorder prediction 162 182 - -
Sto3g1310 957 CDD AAA 286 436 - -
Sto3g1310 957 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 104 931 - -
Sto3g1310 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 494 IPR027417 -
Sto3g1310 957 MobiDBLite consensus disorder prediction 115 136 - -
Sto3g1310 957 Gene3D - 266 443 IPR027417 -
Sto3g1310 957 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 104 931 - -
Sto3g1310 957 Gene3D - 446 508 - -
Sto3g1310 957 Gene3D - 509 622 - -
Sto3g1310 957 MobiDBLite consensus disorder prediction 162 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1310 Sto-Chr3 9514227 9517874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1310 263 557 Core DNA Replication Machinery Family AT1G21690 25.000 9.71e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1310 - - gmx:100812040 1186.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1310 3 9514227 9517874 Sto3g1310 3 9514227 9517874 ECH