Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1308 ATGGCATCAAGCGAAGGATTTCTGACAGATGAGCAGAGGGAAATGCTGAAGATTGCCAGCCATAATGTGGAAAATTTATCTTCGTCTCCAAAATCTCCTACATCCTTGCTTTCTGAGCATCATATAAAAGCACCTGCTGGTAGTAAGGCACAAACTGCTGGGATTGCTGTAAGGCATGTGCGACGTTCACATTCTGGAAAGTTTGTGCGCGTGAAGAAGGACAATTTTAATGCTCTACTTATTTTGAATGTAGATGGTGCTGGTGGCAAGGGCACTTGGGGGAAATTGCTTGATACTGATGGTGAATCTCATATAGACAGGAAAGACCCAAATTATGACAGTGGTGAGGAACCCTATCAACTGGTTGGGTCTACTGTTACTGACCCCTTAGACGATTTCAAGAAGTCAGTTGTATCAACTATTGAGGAATATTTCAGTACTGGTGATGTGGAATTAGCTGCTTCTGACCTCAGAGAACTTGGTTCAAGTGAATATTATCCATACTTCATCAAGCGCCTTGTGTCTATGGCCATGGATAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCATTGTATTCTGATGTAATCAGTCCTTCACAGATCAGGGATGGATTTTTTATGCTTCTTGAATCTGCTGATGATCTTGCAGTGGACATACTGGATGCAGTCGACATCCTTGCTTTATTCTTGGCTCGTGCTGTTGTTGATGACATCCTTCCTCCAGCCTTTCTTGCAAGGGCAAAAAAGGCACTTCCTGAATCTTCCAAGGGGGTTCAGGTTATCCAGACTGCTGAGAAGAGTTATCTCTCAGCTCCACATCACGCAGAGCTTGTGGAAAGGCGGTGGGGTGGTAGCACTCACATCACTGTTGAGgaagtgaagaaaaaaattgcAGATTTATTAAGAGAATATGTTGATAGTGGTGACACAGTTGAAGCCTGTAGGTGCATTCGGGAGTTGGGGGTCTCATTCTTCCATCATGAGGTTGTGAAGAGGGCTCTGGTACTTGCCATGGAGATTCGTTCAGCTGAACCTTTATTGTTGAAGTTATTAAAAGAAGCAGCAGAAGAAGGACTCATTAGTTCCAGCCAAATGGTGAAAGGTTTTTCTCGTTTGGCAGAAGGACTGGATGATCTTGCTCTTGATATTCCATCAGCTAAGACCTTGTTTCAATCATTGGTGCCCAAGGCAATATCTGAAGGATGGCTTGATGCTTCGTTTATGAAACCCTCTGATGAAGATGGGGATGTCCAAGTTGAAGATGAAAAGGTGAGGAAGTACAAAGAAGAGGCAGTTACTATAATTCATGAGTATTTTCTCTCTGATGATATCCCTGAACTCATTAGGAGTCTTGAAGATATTGGGGCACCTGAGTATAACTCAATATTTTTGAAGAAGCTAATAACTCTTGCCATGGACagaaaaaacagagaaaaggAAATGGCATCTGTGCTGCTGTCTGCTCTTCATATAGAGATCTTCTCAACAGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGATACAGCACTGGATATATTGGACGCTTCAAATGAGCTTGCCCTATTTTTAGCTCGGGCTGTAATCGATGATGTGTTGGTCCCTCTGAATCTAGAAGAAATTGGCAGCAGGTTGCCTCCAAAATGCAGTGGGAGTGAAACTGTGCGTATGGCTCGATCACTCATTGCTGCTCGTCACGCCGGCGAGAGGCTATTGAGATGTTGGGGTGGTGGGACTGGATGGGCTGTGGAGGATGCCAAGGACAAGATCATGAAACTCTTGGAGGAGTACGAAAGTGGGGGTGTTGTGAGTGAAGCATGCCAGTGTATTCGTGACCTCGGAATGCCTTTCTTCAACCATGAGGTGGTGAAGAAAGCTTTGGTTATGGCTATGGAGAAGAAGAATGATAGGTTGCTTGATCTTCTTCAGGAATGCTTCAGCGAAGGTCTTATCACCACCAATCAGATGACAAAAGGGTTCACCCGCATCAAGGATGGTCTTGACGATCTGGCCCTGGATATTCCAAATGCAAAGGACAAGTTTGGCTACTATGTGGAGTATGCAATGAAGAAGGGTTGGCTTCTACAGTCATTTGATTCCTCAGATGTCTAA 2136 0.4335 MASSEGFLTDEQREMLKIASHNVENLSSSPKSPTSLLSEHHIKAPAGSKAQTAGIAVRHVRRSHSGKFVRVKKDNFNALLILNVDGAGGKGTWGKLLDTDGESHIDRKDPNYDSGEEPYQLVGSTVTDPLDDFKKSVVSTIEEYFSTGDVELAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYSDVISPSQIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARAKKALPESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGDTVEACRCIRELGVSFFHHEVVKRALVLAMEIRSAEPLLLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKTLFQSLVPKAISEGWLDASFMKPSDEDGDVQVEDEKVRKYKEEAVTIIHEYFLSDDIPELIRSLEDIGAPEYNSIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLVPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRLLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKDKFGYYVEYAMKKGWLLQSFDSSDV 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1308 711 Gene3D - 283 415 - -
Sto3g1308 711 Gene3D - 581 709 - -
Sto3g1308 711 Gene3D - 420 573 - -
Sto3g1308 711 Gene3D - 125 273 - -
Sto3g1308 711 SUPERFAMILY ARM repeat 293 413 IPR016024 -
Sto3g1308 711 ProSiteProfiles MI domain profile. 430 551 IPR003891 -
Sto3g1308 711 PANTHER PROGRAMMED CELL DEATH 4 1 705 IPR039778 GO:0045892
Sto3g1308 711 SMART ma3_7 297 408 IPR003891 -
Sto3g1308 711 SMART ma3_7 594 703 IPR003891 -
Sto3g1308 711 SMART ma3_7 133 244 IPR003891 -
Sto3g1308 711 SMART ma3_7 431 542 IPR003891 -
Sto3g1308 711 SUPERFAMILY ARM repeat 590 706 IPR016024 -
Sto3g1308 711 Pfam MA3 domain 133 244 IPR003891 -
Sto3g1308 711 Pfam MA3 domain 432 541 IPR003891 -
Sto3g1308 711 Pfam MA3 domain 595 702 IPR003891 -
Sto3g1308 711 Pfam MA3 domain 297 408 IPR003891 -
Sto3g1308 711 ProSiteProfiles MI domain profile. 296 417 IPR003891 -
Sto3g1308 711 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 705 - -
Sto3g1308 711 ProSiteProfiles MI domain profile. 132 253 IPR003891 -
Sto3g1308 711 ProSiteProfiles MI domain profile. 593 711 IPR003891 -
Sto3g1308 711 SUPERFAMILY ARM repeat 428 586 IPR016024 -
Sto3g1308 711 SUPERFAMILY ARM repeat 131 290 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1308 Sto-Chr3 9496453 9499584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1308 597 693 Eukaryotic Initiation Factors Gene Family AT5G57870 33.000 1.75e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1308 - - gmx:100809081 1227.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1308 3 9496453 9499584 Sto3g1308 3 9496453 9499584 ECH