Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1304 ATGGCGGGTTCCGCAGCTCTGGCTTCAGAGCCAAACGCAGAGGTATTTTCATGGTTGAAATCTCTTCCTCAGGCTCCAGAGTACCGGCCAACTTTGGCTGAGTTTCAAGATCCAATTTCATACATTTTTAAGATCGAGAAGGAAGCTTCCAAGTATGGAATCTGCAAAATTGTTCCACCTGTGCCGCCTTCTGCGAAAAAGACTGCAATAGCGAATCTTAATCGCTCCTTGGCAGCACGAGCTGCTTCCTCTGACTCTTCTAATTCGAAATCTCAGCCTACATTCACCACAAGGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCCACGGCCCGTGCAGCGTCCTGTGTGGCAGAGTGGTGACTACTACACGTTTCAGGAATTTGAAGCCAAGGCCAAGGCTTTTGAGAAGAATTATCTGAAGAAATGTGCTAAGAAAGGTGGCCTCTCGCCTCTGGAGATTGAAACGCTTTATTGGAAGGCGACAGTGGACAAACCCTTCTCTGTGGAGTATGCAAACGATATGCCTGGTTCGGCTTTTGTTCCCGTGAACGGAAAAAAATGTAGAGAGGCAGGGGAGTGTGCGACTCTTGGTGAGACTGCATGGAACATGAGGGGGGTGTCACGGGCAAATGGCTCTTTATTGAGGTTTATGAAGGAGGAGATCCCAGGTGTTACATCACCGATGGTGTATGTCGCTATGTTGTTCAGCTGGTTTGCTTGGCATGTAGAGGATCATGACTTGCATAGCTTGAATTACCTCCATATGGGGGCAGGCAAGACTTGGTATGGCGTGCCACGGGATGCAGCAGTTGCATTCGAGGAAGTGGTCAGAGTTCATGGGTATGGAGGGGAAATAAACCCACTTGTTACTTTTGCTATACTTGGTGAGAAAACCACGGTGATGTCACCTGAAGTATTTGTCAGTGCAGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATATGTTGTCACATTTCCAAGAGCCTATCACACTGGGTTTAGTCATGGATTTAATTGCGCGGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCACACTTCCAGTTACTTTATGATCTTGCCCTAGCTTTATGTTCAAGAATTCCTGGGGGCATAAGTGCTGAGCCAAGGAGTTCTCGACTTAAAGATAAGAGGAAGAGTGAAGGGGAGACTGTAATTAAAGAACTATTTGTCCATAATGTGTTACAGAACAATGATATGCTTCATGAACTTGGGAAAGAATCTGCTATAGTACTTCTTCCTCGTAGTTCTTCAGATATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAACAACTAAAGTTGAATCCTAGGTATTCCCTCAGTGCATGCAATTCTGAGGGAGAGAATTCTTCAAAAGGTTATGTTTCTGATGACCTGGTGTTCAGCAGAAGTCAGGGTATCAAGCAAGTGAAAGGTTTCTATTCAGTTAAAGAGAAGTTTGCTTCATTGTGTGAAAGGAATAGGGTTTCATCATTAAGTGTGAATGATAACATATGTTCTTCAAGTTCTAAGCCACTTCAAGGAGACACtgaaagagaaacaagtcagggGGATGGGTTATCAGATCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTGCTTGTGTAGCTATTGTACAGCCTAGGGAACCAGCGGCTAGATACCTTATGTCTGCTGATTGTAGCTTTTTTAATGACTGGGTTGTGGGTTCTGGAGTAAGTAGCAATAAATTTACTGTTGCCCATGGAGATGCAACTATTTCTGAGAAAAACACCTTTACAGGATGGAAGGTATCGAGTGCCCGAGATAGTTTATCTGATGTTGCAGGTCAATCTGTTAAACACCAGATACAGGCTGACGATGAATTTTACGAGGAAGCTTTGCATACTAAAAGACAGAAAGACAATTCTGCACTTGGCTTATTGGCATCAGCATATGGAAATTTATCTGATTCAGAGGAAGACCAGGTTGACCCAGGTAGTGCAGCTGAAGATCATGAATCAAATGTAATAAACCGTCCATCAGggactgaatttaaAAGTACAAGGGCAGTGCCTCGTTGTACCTTCAATTATCCTCAAGATATTCATGATGCTGAAACATCAATGTTTGGCAATGGTGTAGCTTCCATTGATAACAAGAGTGCTTCATTATTGCCTCAATCCGATGAAGACTCATCTAGATTGCATGTCTTCTGTCTAGAGCATGCTGCAGAAGTGGAGCAGCAACTCCTCCCAATAGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCCAAGGTAGAGGCTGAAGCCAAGTTTGTGGCGGAAGAACTGGGGATTGATTACACCTGGAAGAACCTTGCATACAGACATGCCACCAAAGAGGATGAGGAGAGGATCCAGTCAGCTCTGGATAGTGAGGAAGCTATTCCTGCAAATGCAGATTGGGCTGTAAAACTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGCTCTCCTCTCTACAGCAAGCAGATGCCTTACAATTCTGTTATATATTATGCATTTGGCCGTAGTTCTCTAGCAAGTTCACCCATGGAGCCCAAGGTCTACCAAAGAAGGGCTAGCAAGCAGAAAAAGGTTGTTGCTGGAAAATGGTGCGGTAAAGTTTGGATGTCCAATCAGGTCCACCCACTTTTAGCAAAAAGAGATTCTGAAGATGGGGATGGGAAAAGCTTACATGCATGGTCATTACCTGACAAGAAAATTGAGAGATCAGAAAGTGCCCACAAAAACAACTTTACTAAAAAATCTGGtaggaaaaggaaaatgactgcAGAGAGTGGAGGGGCCAGGAAAGCCAGTTTTTCTGAGAGAGAATATGTAGTTTCAGATAATTCAATTGAAGATAAATATAACCAACAGCAGTTGAGAATTCCTCGGAACAAGCAAGCCAGATATATTGAGAGAGATGATGCAGCTTCGGAAGGGGACTATTCTCCACTGCAGCACTATGGAAAACTTATAAGCAAGCAATCAAAATGCATTGAAAGTGATGCAGTTTCAGATGATTCACTGGATGATAATTCTCATATGCCGCATGGGAGGAATTTCAAAGTCAAAGAGCCAAAATTTATTGATAGTGATGTGGTCTCAGATGATACAATGGGATATGGTTCTGATTGGAATCTGAGGGAAGAACATAGCAGCAAGCAAATCCAAGACTCGGATAGAGATGCAATTTCTGAGGATTCAATGGGTGGGGGTTCTCTTCAGTTGCATGAAAAGACTTGTAAAAGCAAGAAAGCCAAATATGTTGCTGAAGATGTAATTTCTGATAATCAAATGGAAGACCATTTTCAGAAGCCGCAAAGGAGGACTTCTAAAAGCAGGCAAGCCAAATATCTTGCAGAAGAAGATATTATGGAATCTGATGACCAACTGGAGCATCACACACAGAAGCAGCAGCGAAGGATCCCTAAGAGCAGGCAAGCCAAATACCTTGCTGGAGAGGATATTACATCTGATGACCAACTGGAGGATCATACTCGGAAGTATAATAGAAGGATTCCTAAGAGCAGGCAAGCCAAATGTCTAGTTGAGGAAGATGTAATGTCTGATGACCAATTGGAGGATCACTTTGATAAGCAGCAAAGGAGTGTACCAAGGAGCAGGCAAAATAAGCGTATGGTTGATTCAACTGACAATCATTCTCTTCGGCTGCATAGAAGAAGGAAGCAAGCTAAAAGCATGGATGAAGACCATATAAATTCAGATGATCAAATGGAGGATTCATCTCATCATTCACAAAGGAGGAGTCTTCGAAGCAAGCAATCTAAATCAGAGACACAACAAGAAAGGAAACAATCAAATCCTCGTGGTGTGAAAGAACAGACATCACAGCCTACAAAACGAGGTGCACGGCTAATGAAACCAAAGGCTTCTTCTCAGAAAAAGAAACAGCCTCCTCGAGTGCAGAAAAACCAAACTAGTAACTGCAGAGAGTTTAATTTATGTattgaagaggaggaagaaggtggACCCAGCACACGCCTTAGGAAGAGAGTCCCAAAAGTTGAGGAGTCTGAAgtaaaaccaaaagaaaagcAAACCAACAGGAGAAAGGCGAACAATGCTACAGCTGTGAAAGTTTCAGCTGGCCATGCCAGAACGAAGGATGAAGAAGCAGAATACCAGTGCGACATTGAGGGGTGCACTATGAGCTTTGGCACGAAACAGGAGCTAGCAGTGCATAAGAGAAACATCTGTCCTGTAAAAGGGTGTGGAAAGAAATTTTTCTCACACAAATATCTGGTGCAGCACCGACGAGTCCACATGGACGACCGCCCCCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAATGGGCATGGGCTCGTACCGAACATATTCGAGTTCATACCGGGGCTCGTCCTTATGTTTGCGCTGAGCCAGGGTGTGGGCAAACATTCAGATTTGTGTCTGATTTTAGTCGCCACAAGCGAAAGACTGGTCATTCAGCAAAGAAGAGTCGTTAA 4590 0.4298 MAGSAALASEPNAEVFSWLKSLPQAPEYRPTLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSAKKTAIANLNRSLAARAASSDSSNSKSQPTFTTRQQQIGFCPRKPRPVQRPVWQSGDYYTFQEFEAKAKAFEKNYLKKCAKKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVNGKKCREAGECATLGETAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVSAGVPCCRLVQNAGEYVVTFPRAYHTGFSHGFNCAEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLKDKRKSEGETVIKELFVHNVLQNNDMLHELGKESAIVLLPRSSSDISVCSKLRVGSQQLKLNPRYSLSACNSEGENSSKGYVSDDLVFSRSQGIKQVKGFYSVKEKFASLCERNRVSSLSVNDNICSSSSKPLQGDTERETSQGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARYLMSADCSFFNDWVVGSGVSSNKFTVAHGDATISEKNTFTGWKVSSARDSLSDVAGQSVKHQIQADDEFYEEALHTKRQKDNSALGLLASAYGNLSDSEEDQVDPGSAAEDHESNVINRPSGTEFKSTRAVPRCTFNYPQDIHDAETSMFGNGVASIDNKSASLLPQSDEDSSRLHVFCLEHAAEVEQQLLPIGGAHILLLCHPDYPKVEAEAKFVAEELGIDYTWKNLAYRHATKEDEERIQSALDSEEAIPANADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSSLASSPMEPKVYQRRASKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDGDGKSLHAWSLPDKKIERSESAHKNNFTKKSGRKRKMTAESGGARKASFSEREYVVSDNSIEDKYNQQQLRIPRNKQARYIERDDAASEGDYSPLQHYGKLISKQSKCIESDAVSDDSLDDNSHMPHGRNFKVKEPKFIDSDVVSDDTMGYGSDWNLREEHSSKQIQDSDRDAISEDSMGGGSLQLHEKTCKSKKAKYVAEDVISDNQMEDHFQKPQRRTSKSRQAKYLAEEDIMESDDQLEHHTQKQQRRIPKSRQAKYLAGEDITSDDQLEDHTRKYNRRIPKSRQAKCLVEEDVMSDDQLEDHFDKQQRSVPRSRQNKRMVDSTDNHSLRLHRRRKQAKSMDEDHINSDDQMEDSSHHSQRRSLRSKQSKSETQQERKQSNPRGVKEQTSQPTKRGARLMKPKASSQKKKQPPRVQKNQTSNCREFNLCIEEEEEGGPSTRLRKRVPKVEESEVKPKEKQTNRRKANNATAVKVSAGHARTKDEEAEYQCDIEGCTMSFGTKQELAVHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSR 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1304 1529 ProSitePatterns Zinc finger C2H2 type domain signature. 1439 1461 IPR013087 -
Sto3g1304 1529 Pfam jmjN domain 26 59 IPR003349 -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 918 976 - -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 676 704 - -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 1076 1098 - -
Sto3g1304 1529 ProSitePatterns Zinc finger C2H2 type domain signature. 1469 1491 IPR013087 -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 1076 1113 - -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 1130 1171 - -
Sto3g1304 1529 SMART cupin_9 196 365 IPR003347 -
Sto3g1304 1529 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Sto3g1304 1529 SMART JmjN_1 24 65 IPR003349 -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 1225 1348 - -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 81 102 - -
Sto3g1304 1529 ProSiteProfiles Zinc finger C2H2 type domain profile. 1467 1496 IPR013087 -
Sto3g1304 1529 Gene3D Classic Zinc Finger 1437 1521 - -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 1225 1255 - -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 918 964 - -
Sto3g1304 1529 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1210 1520 - -
Sto3g1304 1529 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 8 1141 - -
Sto3g1304 1529 ProSiteProfiles Zinc finger C2H2 type domain profile. 1497 1528 IPR013087 -
Sto3g1304 1529 Gene3D Cupin 18 369 - -
Sto3g1304 1529 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Sto3g1304 1529 ProSitePatterns Zinc finger C2H2 type domain signature. 1499 1523 IPR013087 -
Sto3g1304 1529 SUPERFAMILY Clavaminate synthase-like 211 379 - -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 1130 1204 - -
Sto3g1304 1529 ProSiteProfiles Zinc finger C2H2 type domain profile. 1437 1466 IPR013087 -
Sto3g1304 1529 Gene3D Classic Zinc Finger 1384 1436 - -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 1360 1390 - -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 1189 1203 - -
Sto3g1304 1529 SUPERFAMILY beta-beta-alpha zinc fingers 1437 1473 IPR036236 -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 1262 1309 - -
Sto3g1304 1529 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1141 - -
Sto3g1304 1529 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1210 1520 - -
Sto3g1304 1529 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Sto3g1304 1529 SUPERFAMILY beta-beta-alpha zinc fingers 1477 1521 IPR036236 -
Sto3g1304 1529 MobiDBLite consensus disorder prediction 1360 1404 - -
Sto3g1304 1529 SMART c2h2final6 1467 1491 IPR013087 -
Sto3g1304 1529 SMART c2h2final6 1414 1436 IPR013087 -
Sto3g1304 1529 SMART c2h2final6 1437 1461 IPR013087 -
Sto3g1304 1529 SMART c2h2final6 1497 1523 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g1304 Sto-Chr3 9467293 9476551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1304 1115 1528 C2H2 Transcription Factor Family AT3G48430 38.000 3.59e-73 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto3g1304 JmjC 6.5e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1304 - - gmx:100775813 2037.31